View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12933_high_4 (Length: 341)
Name: NF12933_high_4
Description: NF12933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12933_high_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 27989004 - 27989338
Alignment:
| Q |
9 |
aattattctaaacttgagatcatcgatattcaccttttctatgccttccaatccaagtctcgaagatccttctttccaatacatggagaccacctagaat |
108 |
Q |
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| T |
27989004 |
aattattctaaacttgagatcatcgatattcaccttttctatgccttccaatccaagtctcgaagatccttctttccaatacatggagaccacctagaat |
27989103 |
T |
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| Q |
109 |
caatttcatcctctattgt--aattcaaattggttctaatctcagaaattcaataaagtaaaatttatgctgtaaattacaaagattttaataactaagc |
206 |
Q |
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| T |
27989104 |
caatttcatcctctattgtgtaattcaaattggttctaatctcacaaattcaataaagtaaaatttatgctgtaaattacaaagattttaataactaagc |
27989203 |
T |
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| Q |
207 |
agaaaagtaaggataatcctaccacacagaacatattaaagaaacaaaagcatgaaatgctatcatcgtaaatttacatattctagtaaccaataaatta |
306 |
Q |
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| T |
27989204 |
agaaaagtaaggataatcctaccacacagaacatattaaagaaacaaaagcatgaaatgctatcatcgtaaatttacatattctagtaaccaataaatta |
27989303 |
T |
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| Q |
307 |
ctaggcattattaaaatctaaccgtagttgataaa |
341 |
Q |
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| T |
27989304 |
ctaggcattattaaaatctaaccgtagttgataaa |
27989338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 293
Target Start/End: Original strand, 27999280 - 27999410
Alignment:
| Q |
165 |
taaaatttatgctgtaaattacaaagatttta--ataactaagcagaaaagtaaggataatcctaccacacagaacatattaaagaaacaaaagcatgaa |
262 |
Q |
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| T |
27999280 |
taaaatttataccgtaaattacaaagttttttttataactaagcagaaaagtaaagataatcctaccatatagaacatattaaagaaacaaaagcatgaa |
27999379 |
T |
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| Q |
263 |
atgctatcatcgtaaatttacatattctagt |
293 |
Q |
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| T |
27999380 |
atgctatcatcataaatttacatattctagt |
27999410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 243 - 341
Target Start/End: Original strand, 27999419 - 27999516
Alignment:
| Q |
243 |
taaagaaacaaaagcatgaaatgctatcatcgtaaatttacatattctagtaaccaataaattactaggcattattaaaatctaaccgtagttgataaa |
341 |
Q |
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| T |
27999419 |
taaagaaacaaaagcatgaaatgctatcatcataaatttacatattctagtggccaataaattactaggcatta-taaaatctaaccgtagttgataaa |
27999516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 24404304 - 24404165
Alignment:
| Q |
8 |
aaattattctaaacttgagatcatcgatattcaccttttctatgccttccaatccaagtctcgaagatccttctttccaatacatggagaccacctagaa |
107 |
Q |
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|||||| |||||| ||||||||||| || |||||||||| |||||||||||||||| | |||||| ||||||| ||||||| |||||| | || || |
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| T |
24404304 |
aaattagtctaaatttgagatcatccctactcaccttttccatgccttccaatccaacttgtgaagattcttctttgcaatacagggagactatctgaaa |
24404205 |
T |
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| Q |
108 |
tcaatttcatcctctattgtaattcaaattggttctaatc |
147 |
Q |
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| T |
24404204 |
ttaattgcatcctttatagtaattcaatctggttttaatc |
24404165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 10505651 - 10505512
Alignment:
| Q |
8 |
aaattattctaaacttgagatcatcgatattcaccttttctatgccttccaatccaagtctcgaagatccttctttccaatacatggagaccacctagaa |
107 |
Q |
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|||||| | |||||||||||||||| ||||||||||||| || ||||||| | || || | | ||||||||||||||||| |||||||| |||| || |
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| T |
10505651 |
aaattagtttaaacttgagatcatccatattcaccttttgcattccttccatttcatgttttgtagatccttctttccaatgcatggagattacctgaaa |
10505552 |
T |
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| Q |
108 |
tcaatttcatcctctattgtaattcaaattggttctaatc |
147 |
Q |
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| T |
10505551 |
ttaattgcatcatttatagtaattgaaataggttttaatc |
10505512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 10505346 - 10505300
Alignment:
| Q |
295 |
accaataaattactaggcattattaaaatctaaccgtagttgataaa |
341 |
Q |
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| T |
10505346 |
accaagaaattacttggcattattaaaatctaatagtagttgataaa |
10505300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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