View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12933_high_6 (Length: 337)
Name: NF12933_high_6
Description: NF12933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12933_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 29281352 - 29281688
Alignment:
| Q |
1 |
gtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgtttcttcttgatttcaatatgattgttat |
100 |
Q |
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| T |
29281352 |
gtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgtttcttcttgatttcaatataattgttgt |
29281451 |
T |
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| Q |
101 |
aataattttacttcttattgagaaaaggacatgtagagataaaaggggaagaaatagacagttactttctaaatgattaaattcttctgtgtcaattgaa |
200 |
Q |
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| T |
29281452 |
aataattttacttcttattgagaaaaggacatgtagagataaaaggggaagaaatagacagttactttctaaatgattaaattcttctgtgtcaattgaa |
29281551 |
T |
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| Q |
201 |
gtttttatgattgtgacaaattaacttccatgaaaaaagaaaaggaaattagtaataaaatattacaaagggatccaataaaaggatgaaccatcaatcc |
300 |
Q |
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| T |
29281552 |
gtttttatgattgtgacaaattaacttccatgaaaaaagaaaaggaaattagtaataaaatattacaaagggatccaataaaaggatgaaccatcaatcc |
29281651 |
T |
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| Q |
301 |
tgaatttgggcatgtccatcttttcatgttttgtatc |
337 |
Q |
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| T |
29281652 |
tgaatttgggcatgtccatcttttcatgttctgtatc |
29281688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 6471374 - 6471307
Alignment:
| Q |
7 |
atgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgttt |
74 |
Q |
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| T |
6471374 |
atgcattgtgaggcttgtgctgaacaactcaagagaaagatactccaaatgagaggtataatttgttt |
6471307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Complemental strand, 6470612 - 6470582
Alignment:
| Q |
303 |
aatttgggcatgtccatcttttcatgttttg |
333 |
Q |
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| T |
6470612 |
aatttgggcatgtccatcttttcatgttttg |
6470582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 42525517 - 42525454
Alignment:
| Q |
1 |
gtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggta |
64 |
Q |
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| T |
42525517 |
gtgaacatgcactgtgaggcttgtgctgagcagctcaaggggaagatactcaaaatgaaaggta |
42525454 |
T |
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