View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12933_high_9 (Length: 308)
Name: NF12933_high_9
Description: NF12933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12933_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 308
Target Start/End: Complemental strand, 40183167 - 40182889
Alignment:
| Q |
30 |
aatatgaccctgcccatggtgttgaaatatttccaactacacttccaacattaactatggttccacnnnnnnncagagccatgtgaggcacaacttgttg |
129 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40183167 |
aatatgaccctgcccatggtgttgaaatattcccaactacacttccaacattaactatggttccactttttttcagagccatgtgaggcacaacttgttg |
40183068 |
T |
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| Q |
130 |
caccattcttagttgtcccaacgtgttaatttccaatgtttttctaatagtgtctagtggtaattcggctaatggacccgtgctacctattccggcgtta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40183067 |
caccattcttagttgtcccaacgtgttaatttccaatgtttttctaatagtgtctagtggtaattcggctaatggacctgtgctacctattccggcgtta |
40182968 |
T |
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| Q |
230 |
ttaactagaatgtcgatacgtccgtattttgatataatagtgtccacggctgaagtagcgctttgatcagatgaaacgt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40182967 |
ttaactagaatgtcgatacgtccgtattttgatataatagtgtccacggctgaagtagcgctttgatcagatgaaacgt |
40182889 |
T |
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