View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12934_high_1 (Length: 1452)
Name: NF12934_high_1
Description: NF12934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12934_high_1 |
 | |
|
| [»] scaffold0142 (2 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0795 (1 HSPs) |
| | |
|
| [»] scaffold0555 (1 HSPs) |
| | |
|
| [»] scaffold0161 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 129; Significance: 4e-66; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 4e-66
Query Start/End: Original strand, 1237 - 1429
Target Start/End: Complemental strand, 18929887 - 18929696
Alignment:
| Q |
1237 |
atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc |
1336 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| ||||||||||| |
|
|
| T |
18929887 |
atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc |
18929789 |
T |
|
| Q |
1337 |
tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc |
1429 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
18929788 |
tggtattttcaccaacctcatttaatgtggtgaacattagttgacttttactcttgcaggaattgaagtattttcctcaattaaaggagtttc |
18929696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 521 - 710
Target Start/End: Complemental strand, 17404087 - 17403898
Alignment:
| Q |
521 |
atcatttggctcattaaggacatattgagcgaatcatgtgagaagactataggtttgtgaccttcgcggccaggaaagtcgtcctcaaccttttcagggt |
620 |
Q |
| |
|
||||| |||||||| || ||||| ||||||||| ||||||| | |||| |||||||| ||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
17404087 |
atcatgtggctcatgaaagacatgttgagcgaagcatgtgaaaggactctaggtttgcgaccttcgctgccaggaaagtcttcctcaaccttttcagggt |
17403988 |
T |
|
| Q |
621 |
ctaatttggaatatgcaaagggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatcttgg |
710 |
Q |
| |
|
||||||||||| || | ||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
17403987 |
gtaatttggaatctgggtaaggccctataaaggcgtaaacagtaccagagacagagtatggaatgagtacctgagatttctaaatcttgg |
17403898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 1233 - 1413
Target Start/End: Complemental strand, 17403377 - 17403198
Alignment:
| Q |
1233 |
tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt |
1332 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||||| ||||| | || || || ||| |||||||||||| || ||| ||||| | |
|
|
| T |
17403377 |
tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt |
17403279 |
T |
|
| Q |
1333 |
tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt |
1413 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||| ||| | |||||| |||||| ||||||||||||||||| |
|
|
| T |
17403278 |
tagctggtaattttaccagcctcatttaatgtggtcaacattagttaacttttacctttgcagcaattgaagtcttttctt |
17403198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1330 - 1431
Target Start/End: Complemental strand, 26651400 - 26651299
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc |
1429 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| ||||| |||||||||| |||||||||| |
|
|
| T |
26651400 |
tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagttttttcttcaacttaaggagtttc |
26651301 |
T |
|
| Q |
1430 |
aa |
1431 |
Q |
| |
|
|| |
|
|
| T |
26651300 |
aa |
26651299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 159 - 490
Target Start/End: Complemental strand, 24545648 - 24545313
Alignment:
| Q |
159 |
aaaacaaattggcttaaccagaaagccagaaaagcaatatgctctgtatcagaaacttcggtggtatctttgtcgaagtatgtgttcatgaacagaccat |
258 |
Q |
| |
|
|||||| | |||||||||| |||||||| ||||||||| |||| ||| |||||||||| |||||| |||||||| |||||| ||||| ||| |||||| |
|
|
| T |
24545648 |
aaaacatactggcttaaccggaaagccaaaaaagcaatgtgctatgtgtcagaaactttggtggtgtctttgtcaaagtattcgttcaagaatggaccat |
24545549 |
T |
|
| Q |
259 |
----aggtgactgggttaggagtgaattgtgtatcacactctcgatcagggtcgtaggcctcaccagtcgagggaagcccagtaat--cagcgacgtcca |
352 |
Q |
| |
|
| |||||||||| |||| ||||| || ||| | ||||| ||||| || ||||| |||||||| | || || ||||| || | || || || | |
|
|
| T |
24545548 |
gcataagtgactgggtcaggaaaaaattgcgtctcatattctcggtcaggatcataggcttcaccagttggggaaataccagtgatagctgctacatcta |
24545449 |
T |
|
| Q |
353 |
gcagagtgggagttaacatgccacatttgagtt-caagtttttggtagaactttcatagaaatgcattgcagccaatatcaggttctcatcatactctaa |
451 |
Q |
| |
|
||| ||| | |||||||||||||| |||| || | | |||||| ||||||| ||||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
24545448 |
gcaaagtca---tcaacatgccacatttaagttgcatggtattggtaaaactttcctagaaatgcatcacagccaatatcaactgctcatcatactctaa |
24545352 |
T |
|
| Q |
452 |
ccccgtcttagaaagttaaataaggttgaaaatccctaa |
490 |
Q |
| |
|
|||||||||||| || | ||||||||| || |||||||| |
|
|
| T |
24545351 |
ccccgtcttagagagctgaataaggttaaagatccctaa |
24545313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 361 - 503
Target Start/End: Complemental strand, 17404309 - 17404166
Alignment:
| Q |
361 |
ggagttaacatgccacatttgagtt-caagtttttggtagaactttcatagaaatgcattgcagccaatatcaggttctcatcatactctaaccccgtct |
459 |
Q |
| |
|
||||| ||||| |||||||| |||| || | | ||||| |||||||| |||||| ||| ||||||| ||||| |||||||||||| |||||| ||||| |
|
|
| T |
17404309 |
ggagtcaacataccacatttaagttgcatggtattggtggaactttcccagaaatacatcgcagccagtatcaagttctcatcatattctaacatcgtct |
17404210 |
T |
|
| Q |
460 |
tagaaagttaaataaggttgaaaatccctaattttctccaaata |
503 |
Q |
| |
|
||||||||| || |||||||| || ||||||||||| |||||| |
|
|
| T |
17404209 |
tagaaagttggatgaggttgaagattcctaattttctacaaata |
17404166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1265 - 1385
Target Start/End: Original strand, 25519999 - 25520118
Alignment:
| Q |
1265 |
tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt |
1364 |
Q |
| |
|
||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||| || | |||||||| |
|
|
| T |
25519999 |
tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc |
25520097 |
T |
|
| Q |
1365 |
ggtcaacattggttgattttt |
1385 |
Q |
| |
|
||||||||| ||||| |||| |
|
|
| T |
25520098 |
agtcaacattagttgactttt |
25520118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 2e-52; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 1232 - 1410
Target Start/End: Original strand, 9033046 - 9033225
Alignment:
| Q |
1232 |
gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt |
1329 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| | |||| |
|
|
| T |
9033046 |
gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt |
9033144 |
T |
|
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt |
1410 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9033145 |
tgttagctggtattttcaccagcctcatttaatatggtcaacattagttgacttttactcttgcaggaattgaagtctttt |
9033225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 5e-32
Query Start/End: Original strand, 1233 - 1416
Target Start/End: Complemental strand, 4770307 - 4770126
Alignment:
| Q |
1233 |
tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt |
1332 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| ||||||||||||||||| |||||| || |||| |
|
|
| T |
4770307 |
tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttca-ggggggtaaattgt |
4770210 |
T |
|
| Q |
1333 |
tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaa |
1416 |
Q |
| |
|
||||||||| ||| | ||| ||| |||||||||| ||||||| ||| | ||||| ||||||||||| | |||||||||||||| |
|
|
| T |
4770209 |
tagctggtaattttaacagactcgtttaatgtggccaacattcgtttacttttatccttgcaggaatcgtagtcttttcttcaa |
4770126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 1262 - 1411
Target Start/End: Original strand, 4765286 - 4765434
Alignment:
| Q |
1262 |
ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa |
1361 |
Q |
| |
|
||||||||||| ||||||||||| | | | | ||| |||||||||||||||| |||||| | |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4765286 |
ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa |
4765384 |
T |
|
| Q |
1362 |
tgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc |
1411 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
4765385 |
tgtgatcaacattagttgacttttactcttgcaggaatcgaagttttttc |
4765434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1330 - 1410
Target Start/End: Complemental strand, 15687420 - 15687340
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt |
1410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
15687420 |
tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtctttt |
15687340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1331 - 1438
Target Start/End: Original strand, 24698727 - 24698834
Alignment:
| Q |
1331 |
gttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttca |
1430 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||||||| ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
24698727 |
gttagctgataatttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttttcttcaacataaggagtttcg |
24698826 |
T |
|
| Q |
1431 |
aagagatg |
1438 |
Q |
| |
|
| |||||| |
|
|
| T |
24698827 |
acgagatg |
24698834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1332 - 1425
Target Start/End: Original strand, 16242605 - 16242699
Alignment:
| Q |
1332 |
ttagctggtattttcaccagcctcatttaatgtggtcaacattggtt-gatttttactcttgcaggaattgaagtcttttcttcaatcaaaggag |
1425 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||| ||| || | ||||| ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
16242605 |
ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttttcctcaatcaaaggag |
16242699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1330 - 1427
Target Start/End: Original strand, 29614037 - 29614135
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagtt |
1427 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| |||| ||| | |||||||||| | |||||||| |
|
|
| T |
29614037 |
tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaatcaaagtttttttcttcaaacgaaggagtt |
29614135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1343 - 1410
Target Start/End: Original strand, 4832190 - 4832258
Alignment:
| Q |
1343 |
tttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt |
1410 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||| |||||||||| |
|
|
| T |
4832190 |
tttcaccagcctcatttaatatggtcaacattagttgactttttatctttgcaggaatcgaagtctttt |
4832258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1330 - 1413
Target Start/End: Original strand, 13428406 - 13428488
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt |
1413 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| |||| ||||| ||||| ||| || ||||| |||| ||||| ||||||| |
|
|
| T |
13428406 |
tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttgactttatct-ttgcatgaatcgaagtgttttctt |
13428488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 8e-43; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 8e-43
Query Start/End: Original strand, 1233 - 1438
Target Start/End: Complemental strand, 17525444 - 17525241
Alignment:
| Q |
1233 |
tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt |
1332 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |||||||| ||||||||| |||| |||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
17525444 |
tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt |
17525347 |
T |
|
| Q |
1333 |
tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa |
1432 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| | |||||| |||| ||||||||||| ||| |||||||| |
|
|
| T |
17525346 |
tagctggtaatttcaccagtctcatttaatgtggtcaacattagttgacttttactcctctaggaatcgaagccttttcttcaacttaagaagtttcaac |
17525247 |
T |
|
| Q |
1433 |
gagatg |
1438 |
Q |
| |
|
|||||| |
|
|
| T |
17525246 |
gagatg |
17525241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 1263 - 1391
Target Start/End: Original strand, 31125745 - 31125872
Alignment:
| Q |
1263 |
tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat |
1362 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||||| || |||||| ||||| || ||||||||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
31125745 |
tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat |
31125843 |
T |
|
| Q |
1363 |
gtggtcaacattggttgatttttactctt |
1391 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |
|
|
| T |
31125844 |
gtggtcaacattagttgacttttactctt |
31125872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1236 - 1410
Target Start/End: Original strand, 22394009 - 22394179
Alignment:
| Q |
1236 |
catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag |
1335 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||||| ||||| ||||| | | || ||| |||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
22394009 |
catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag |
22394106 |
T |
|
| Q |
1336 |
ctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt |
1410 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
22394107 |
ttggtaatttcaccagcct--tttaatgtggtcaacattagttccgttttactcttgcaggaatcaaagtctttt |
22394179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 1330 - 1414
Target Start/End: Complemental strand, 16177759 - 16177672
Alignment:
| Q |
1330 |
tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttc |
1414 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
16177759 |
tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttttcttc |
16177672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1371 - 1427
Target Start/End: Original strand, 1176918 - 1176974
Alignment:
| Q |
1371 |
cattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt |
1427 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
1176918 |
cattagttgacttttactcttgcaggaatcgaaatcttttcttcaataaaaggagtt |
1176974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1341 - 1427
Target Start/End: Complemental strand, 32784534 - 32784447
Alignment:
| Q |
1341 |
attttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtc-ttttcttcaatcaaaggagtt |
1427 |
Q |
| |
|
||||||| ||| ||||||||||||||| || ||| ||||| ||||||| || ||||||||||| || |||||| ||||||| |||||| |
|
|
| T |
32784534 |
attttcatcagtctcatttaatgtggttaatattagttgacttttacttttacaggaattgaaatctttttctacaatcaatggagtt |
32784447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 8e-40; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 8e-40
Query Start/End: Original strand, 1260 - 1427
Target Start/End: Original strand, 20064063 - 20064227
Alignment:
| Q |
1260 |
ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt |
1359 |
Q |
| |
|
||||| ||||||||||||| |||||| |||| || || ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| ||| |
|
|
| T |
20064063 |
ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt |
20064159 |
T |
|
| Q |
1360 |
aatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt |
1427 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
20064160 |
aatgtggtcaacatcagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagagtt |
20064227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 1329 - 1427
Target Start/End: Complemental strand, 25951783 - 25951685
Alignment:
| Q |
1329 |
ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt |
1427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
25951783 |
ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttttctctaatcaaaggagtt |
25951685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 1330 - 1427
Target Start/End: Original strand, 20058300 - 20058397
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt |
1427 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
20058300 |
tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagagtt |
20058397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 1329 - 1427
Target Start/End: Complemental strand, 21165655 - 21165557
Alignment:
| Q |
1329 |
ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt |
1427 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
21165655 |
ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtctttccttcaatcaaaggagtt |
21165557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 1327 - 1427
Target Start/End: Original strand, 23209772 - 23209872
Alignment:
| Q |
1327 |
atttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagt |
1426 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
23209772 |
atttattagctgttatttgcaccagcctcaattaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagtattttcttcaaacaaaggagt |
23209871 |
T |
|
| Q |
1427 |
t |
1427 |
Q |
| |
|
| |
|
|
| T |
23209872 |
t |
23209872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 641 - 708
Target Start/End: Complemental strand, 24879580 - 24879513
Alignment:
| Q |
641 |
ggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatctt |
708 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
24879580 |
ggccctagaaaggtgtaaacagtaccagagacagagtatggaatgagtacctgagatttccaaatctt |
24879513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1330 - 1423
Target Start/End: Complemental strand, 20061323 - 20061232
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaagg |
1423 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
20061323 |
tgtttgctggtattt-caccagcctcgtttaatatggtcaccattagttgacttttactcttgcaggaatcgaagt-ttttcttcaatgaaagg |
20061232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1330 - 1374
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacatt |
1374 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19217727 |
tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt |
19217771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1303 - 1411
Target Start/End: Complemental strand, 24878889 - 24878782
Alignment:
| Q |
1303 |
gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattga |
1402 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||||| ||| ||||| ||| ||||||||||| ||||||||| ||||| ||||| ||||| |||| || |
|
|
| T |
24878889 |
gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgacttttatctttgcaagaatcga |
24878791 |
T |
|
| Q |
1403 |
agtcttttc |
1411 |
Q |
| |
|
||||||||| |
|
|
| T |
24878790 |
agtcttttc |
24878782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1299 - 1374
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
| Q |
1299 |
cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt |
1374 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||||||| ||| |||| ||| |||||||||| ||||||||||| |
|
|
| T |
17987988 |
cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt |
17987914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1376 - 1427
Target Start/End: Complemental strand, 20713647 - 20713596
Alignment:
| Q |
1376 |
gttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt |
1427 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20713647 |
gttgacttttattcttgcaggaatcaaagtcttttcttcaatcaaaggagtt |
20713596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1299 - 1409
Target Start/End: Complemental strand, 22011588 - 22011479
Alignment:
| Q |
1299 |
cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaaca-ttggttga-tttttactcttgcagg |
1396 |
Q |
| |
|
||||||||||||||||| | ||||||| |||||||| ||| ||||| ||| ||||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
22011588 |
cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatttggttgactttttact-ttgcagg |
22011492 |
T |
|
| Q |
1397 |
aattgaagtcttt |
1409 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
22011491 |
aatcgaaggcttt |
22011479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 1329 - 1438
Target Start/End: Complemental strand, 11362160 - 11362051
Alignment:
| Q |
1329 |
ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt |
1428 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
11362160 |
ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttttcttcaacttaaggagttt |
11362061 |
T |
|
| Q |
1429 |
caaagagatg |
1438 |
Q |
| |
|
||| |||||| |
|
|
| T |
11362060 |
caacgagatg |
11362051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1296 - 1374
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
| Q |
1296 |
ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt |
1374 |
Q |
| |
|
||||||||||||| |||||| |||||||| | ||||||||| ||| |||| ||| |||||||||| ||||||||||| |
|
|
| T |
10071078 |
ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt |
10071001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 3e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 1329 - 1438
Target Start/End: Original strand, 23539981 - 23540090
Alignment:
| Q |
1329 |
ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt |
1428 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
23539981 |
ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttttcttcaatcaaaggagttt |
23540080 |
T |
|
| Q |
1429 |
caaagagatg |
1438 |
Q |
| |
|
| | |||||| |
|
|
| T |
23540081 |
cgacgagatg |
23540090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 1218 - 1428
Target Start/End: Complemental strand, 28371705 - 28371496
Alignment:
| Q |
1218 |
aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct |
1317 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||| | ||||| ||||||||| ||||| | |
|
|
| T |
28371705 |
aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattt-t |
28371607 |
T |
|
| Q |
1318 |
tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat |
1417 |
Q |
| |
|
| || ||||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| ||||| ||||| ||| | |||||| ||| |||| | ||| | |
|
|
| T |
28371606 |
ttggtggcaatttgttagttggtattttcactagcataatttaatgtggccaatattagttgacttttattctggtaggaatcgaaacctttccctcagt |
28371507 |
T |
|
| Q |
1418 |
caaaggagttt |
1428 |
Q |
| |
|
|||||||||| |
|
|
| T |
28371506 |
taaaggagttt |
28371496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1332 - 1410
Target Start/End: Complemental strand, 10662187 - 10662109
Alignment:
| Q |
1332 |
ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt |
1410 |
Q |
| |
|
||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||| |
|
|
| T |
10662187 |
ttagctgataatttcaccagactcatttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtctttt |
10662109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1233 - 1410
Target Start/End: Complemental strand, 16601159 - 16600980
Alignment:
| Q |
1233 |
tgacatcatgctttgaaatacttag--cgttttctcaaaaatgtcaattctctccgttgat-tatattccgtcgaaaatggcatttcttggggggcaatt |
1329 |
Q |
| |
|
||||||||||||||||||| ||| | |||||| |||||||||||||||| |||| | || | | ||| |||||||||| ||||| ||| ||| ||||| |
|
|
| T |
16601159 |
tgacatcatgctttgaaatgcttgggacgtttt-tcaaaaatgtcaattccctccttcgaaattttttcagtcgaaaatgacattttttgaggg-caatt |
16601062 |
T |
|
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt |
1410 |
Q |
| |
|
| ||||| ||| ||||| ||| ||||||||||| ||||||||| ||||| |||||| |||||||||||||||| |||| |
|
|
| T |
16601061 |
tattagcctgtaatttcaacagactcatttaatgcagtcaacattagttgactttttatctttgcaggaattgaagtatttt |
16600980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 7e-31; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 1317 - 1410
Target Start/End: Complemental strand, 2545864 - 2545771
Alignment:
| Q |
1317 |
ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt |
1410 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
2545864 |
ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtctttt |
2545771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1332 - 1438
Target Start/End: Original strand, 14986744 - 14986846
Alignment:
| Q |
1332 |
ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt-cttttcttcaatcaaaggagtttca |
1430 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||| |||||| |||| |||| ||||||| |
|
|
| T |
14986744 |
ttagctggtattttcaccagcctcatt-----tggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca |
14986838 |
T |
|
| Q |
1431 |
aagagatg |
1438 |
Q |
| |
|
| |||||| |
|
|
| T |
14986839 |
acgagatg |
14986846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1332 - 1438
Target Start/End: Original strand, 15416355 - 15416457
Alignment:
| Q |
1332 |
ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt-cttttcttcaatcaaaggagtttca |
1430 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||| |||||| |||| |||| ||||||| |
|
|
| T |
15416355 |
ttagctggtattttcaccagcctcatt-----tggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca |
15416449 |
T |
|
| Q |
1431 |
aagagatg |
1438 |
Q |
| |
|
| |||||| |
|
|
| T |
15416450 |
acgagatg |
15416457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1330 - 1427
Target Start/End: Original strand, 4173104 - 4173201
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt |
1427 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| |||||||| ||||| || || | ||||||| || |||| ||| ||||||||||| ||||| |
|
|
| T |
4173104 |
tgttagctggtattttcacctgccttatttaatgtgttcaacattagttgacttataattttgcaggtatcaaagtatttccttcaatcaaaagagtt |
4173201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 1329 - 1438
Target Start/End: Complemental strand, 20146371 - 20146262
Alignment:
| Q |
1329 |
ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt |
1428 |
Q |
| |
|
||||||| ||||||||||| |||| | || |||||||||||||||| ||||| ||||||| || |||||| |||| ||| |||| | |||||||||| |
|
|
| T |
20146371 |
ttgttagatggtattttcatcagcgttatgtaatgtggtcaacattagttgacttttactgttaaaggaatcgaagcttttccttctgttaaaggagttt |
20146272 |
T |
|
| Q |
1429 |
caaagagatg |
1438 |
Q |
| |
|
||| |||||| |
|
|
| T |
20146271 |
caacgagatg |
20146262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1328 - 1364
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
| Q |
1328 |
tttgttagctggtattttcaccagcctcatttaatgt |
1364 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2563233 |
tttgttagctggtaatttcaccagcctcatttaatgt |
2563197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 4e-26; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 1218 - 1411
Target Start/End: Original strand, 22619579 - 22619770
Alignment:
| Q |
1218 |
aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct |
1317 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||||||| ||||| |||||| | ||||| ||||| | || | ||||| |||||||||| ||||| | |
|
|
| T |
22619579 |
aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t |
22619676 |
T |
|
| Q |
1318 |
tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc |
1411 |
Q |
| |
|
|||| |||||||||||||| ||||| || || |||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
22619677 |
tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgacttttatctttgcaggaatcgaagtcttttc |
22619770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 1330 - 1438
Target Start/End: Original strand, 11013493 - 11013601
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc |
1429 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
11013493 |
tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttttcttcaacttaaggagtttc |
11013592 |
T |
|
| Q |
1430 |
aaagagatg |
1438 |
Q |
| |
|
| |||||| |
|
|
| T |
11013593 |
gacgagatg |
11013601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 1333 - 1438
Target Start/End: Complemental strand, 20146686 - 20146581
Alignment:
| Q |
1333 |
tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa |
1432 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||||| ||| | | |||||||||||||||| |||||||||| |||||| ||||||||| | |
|
|
| T |
20146686 |
tagctggtatattcaccagtctcatttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttttactcaatcgtaggagtttcgac |
20146587 |
T |
|
| Q |
1433 |
gagatg |
1438 |
Q |
| |
|
|||||| |
|
|
| T |
20146586 |
gagatg |
20146581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1329 - 1411
Target Start/End: Complemental strand, 17615766 - 17615684
Alignment:
| Q |
1329 |
ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc |
1411 |
Q |
| |
|
|||||||| ||| ||||| ||| ||||||||||| |||||||||| ||||| ||||| |||||||||| ||| ||||||| |
|
|
| T |
17615766 |
ttgttagcatgtaatttcaacagactcatttaatgcggtcaacattagttgacttttatctttgcaggaatcgaaatcttttc |
17615684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 60; Significance: 7e-25; HSPs: 2)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 27 - 298
Target Start/End: Complemental strand, 446 - 175
Alignment:
| Q |
27 |
gtttgacattcagtcctcaaggaatcatataagttccctaagggtaatttgctaagacaaaacgaatgtccttcatgaagttgaatagccataataactg |
126 |
Q |
| |
|
||||||||| |||| |||| ||||||||||| ||| ||||| | |||||||| | |||||||| || ||||| ||||||||||||||||| ||||| |
|
|
| T |
446 |
gtttgacatccagttctcatggaatcatataggtttcctaaaagcaatttgcttaagcaaaacgagtgaccttcgtgaagttgaatagccatgataacaa |
347 |
T |
|
| Q |
127 |
aactcttgggtatttgaagggagcgggcacggaaaacaaattggcttaaccagaaagccagaaaagcaatatgctctgtatcagaaacttcggtggtatc |
226 |
Q |
| |
|
|||| |||| | ||| || || ||| || || ||| |||||||||| ||||||| ||||| ||||| || | ||| |||||||||||| |||| || |
|
|
| T |
346 |
aacttctgggcacttggagagaacggttacaaaagacatattggcttaaatagaaagctagaaaggcaatgtggtatgtgtcagaaacttcgatggtgtc |
247 |
T |
|
| Q |
227 |
tttgtcgaagtatgtgttcatgaacagaccataggtgactgggttaggagtgaattgtgtatcacactctcg |
298 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||| ||| ||||| ||| | |||||||| ||||| ||||| |
|
|
| T |
246 |
tttgtcaaagtatttgttcatgaatggaccataagtggttgggtcaggtgaaaattgtgtctcacattctcg |
175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142; HSP #2
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 27 - 298
Target Start/End: Complemental strand, 3980 - 3709
Alignment:
| Q |
27 |
gtttgacattcagtcctcaaggaatcatataagttccctaagggtaatttgctaagacaaaacgaatgtccttcatgaagttgaatagccataataactg |
126 |
Q |
| |
|
||||||||| |||| |||| ||||||||||| ||| ||||| | |||||||| | |||||||| || ||||| ||||||||||||||||| ||||| |
|
|
| T |
3980 |
gtttgacatccagttctcatggaatcatataggtttcctaaaagcaatttgcttaagcaaaacgagtgaccttcgtgaagttgaatagccatgataacaa |
3881 |
T |
|
| Q |
127 |
aactcttgggtatttgaagggagcgggcacggaaaacaaattggcttaaccagaaagccagaaaagcaatatgctctgtatcagaaacttcggtggtatc |
226 |
Q |
| |
|
|||| |||| | ||| || || ||| || || ||| |||||||||| ||||||| ||||| ||||| || | ||| |||||||||||| |||| || |
|
|
| T |
3880 |
aacttctgggcacttggagagaacggttacaaaagacatattggcttaaatagaaagctagaaaggcaatgtggtatgtgtcagaaacttcgatggtgtc |
3781 |
T |
|
| Q |
227 |
tttgtcgaagtatgtgttcatgaacagaccataggtgactgggttaggagtgaattgtgtatcacactctcg |
298 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||| ||| ||||| ||| | |||||||| ||||| ||||| |
|
|
| T |
3780 |
tttgtcaaagtatttgttcatgaatggaccataagtggttgggtcaggtgaaaattgtgtctcacattctcg |
3709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 58; Significance: 1e-23; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1233 - 1386
Target Start/End: Original strand, 373696 - 373847
Alignment:
| Q |
1233 |
tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt |
1332 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | | | | || |||||||||||| ||| |||||||||||||||| |
|
|
| T |
373696 |
tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt |
373793 |
T |
|
| Q |
1333 |
tagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta |
1386 |
Q |
| |
|
||| |||| ||| |||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
373794 |
tagttggttattttaccaacctcatttaatgtggtcaacattagttgactttta |
373847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0795 (Bit Score: 53; Significance: 1e-20; HSPs: 1)
Name: scaffold0795
Description:
Target: scaffold0795; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1330 - 1438
Target Start/End: Original strand, 5725 - 5833
Alignment:
| Q |
1330 |
tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc |
1429 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| |||||||||| | ||| |||| |||||||||||| |||| |||||| ||| | ||||||||||| |
|
|
| T |
5725 |
tgttagctggtatttttaccaacctcatttaatgcggtcaacattaggtgactttttttcttgcaggaatcgaagccttttcctcagttaaaggagtttc |
5824 |
T |
|
| Q |
1430 |
aaagagatg |
1438 |
Q |
| |
|
|| |||||| |
|
|
| T |
5825 |
aacgagatg |
5833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1337 - 1417
Target Start/End: Original strand, 5337 - 5417
Alignment:
| Q |
1337 |
tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat |
1417 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
5337 |
tggtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagttttttcatcaat |
5417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 1337 - 1438
Target Start/End: Complemental strand, 5388 - 5287
Alignment:
| Q |
1337 |
tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtcttttcttcaatcaaaggagtttcaaagag |
1435 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||| |||||||| ||||||||||||||| |||||| ||||| ||| |
|
|
| T |
5388 |
tggtaatttcaccagcatcatttaatgtggtcaacattagttgactttta-tcttcgcaggaatcaaagtcttttcttcaacttaaggagcttcaacgag |
5290 |
T |
|
| Q |
1436 |
atg |
1438 |
Q |
| |
|
||| |
|
|
| T |
5289 |
atg |
5287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University