View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12934_low_2 (Length: 638)
Name: NF12934_low_2
Description: NF12934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12934_low_2 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 11 - 621
Target Start/End: Complemental strand, 43188509 - 43187899
Alignment:
| Q |
11 |
cacagacagaacaaaacacacacaagtatcacaaagttgaattcaaatggccggcaaataaagagcaagattggtgaggggcaaatgctacacctagctg |
110 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43188509 |
cacaaacagaacaaaacacacagaagtatcacaaagttgaattcaaatggccggcaaataaagagcaagattgatgaggggcaaatgctacacctagctg |
43188410 |
T |
|
| Q |
111 |
attagaatttagaagtcacccatcccaaaacatgcgggcatcagaaaggttgaattcgagcaatgaaactgtccatgaagataataaaaggcatattaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43188409 |
attagaatttagaagtcacccatcccaaaacatgcgggcatcagaaaggttgaattcgagcaatgaaactgtccatgaagataataaaaggcatattaag |
43188310 |
T |
|
| Q |
211 |
agacaaatcctatcctctacatgcatatgatgtaacatcccactcgtcagtattggaatttcatcagtcggaagatataagttcatgaacgataaatatt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43188309 |
agacaaatcctatcctctacatgcatatgatgtaacatcccactcgtcagtattggaatttgatcagtcggaagatataagttcatgaacgataaatatt |
43188210 |
T |
|
| Q |
311 |
atgaaggatattatcaaacagtatcaggttcacagttgctcacggcaaaggtaaggagaaggcttcggattgatcgtgcttgttggattttagtgcttgt |
410 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43188209 |
atgaaggatattatcagacagtatcaggttcacagttgctcagggcaaaggtaaggagaaggcttcggattgatcgtgcttgttggattttagtgcttgt |
43188110 |
T |
|
| Q |
411 |
gtccttttgctaatgttatgtattatatattagttgtaatggacctcgatgtttcttgttcattcgactgattatgtataattattttaacatgtagctt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43188109 |
gtccttttgctaatgttatgtattatatattagttgtaatggacctcgatgtttcttgttcattcgactgattatgtataattattgtaacatgtagctt |
43188010 |
T |
|
| Q |
511 |
gagactgctttgtactttgaatctcaacttatgttgtacttctgtattgtataattaatgtatccaatatcagatttaacgcacatgccaaatattctag |
610 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
43188009 |
gagactgctttgtactctgaatctcaacttatgttatacttccatattgtataattaatgtatccagtatcagatttaacacacatgccaaatattctag |
43187910 |
T |
|
| Q |
611 |
acacgtttagt |
621 |
Q |
| |
|
||||||||||| |
|
|
| T |
43187909 |
acacgtttagt |
43187899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 43208865 - 43208630
Alignment:
| Q |
6 |
agcagcacagacagaacaaaacacacacaagtatcacaaagttgaattcaaatggccggcaaataaagagcaagattggtgaggggcaaatgctacacct |
105 |
Q |
| |
|
|||| |||| |||||||||||||| || | |||||||||| ||||||||||||| ||||||||||||||||||||| |||| | ||||||||| |||| |
|
|
| T |
43208865 |
agcaacacaaacagaacaaaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacct |
43208766 |
T |
|
| Q |
106 |
agctgattagaatttagaagtcacccatcccaaaacatgcgggcatcagaaaggttgaattcgagcaatgaaactgtccatgaagataataaaaggcata |
205 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
43208765 |
aactgattagaatttagaagtcacccatcccaaaactcgtgggcatcagaaaggttgaatttgagcaatgacactgtccatgaagataataaaaggtata |
43208666 |
T |
|
| Q |
206 |
ttaagagacaaatcctatcctctacatgcatatgat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43208665 |
ttaagagacaaatcctatcctctacatgcatatgat |
43208630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 9e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 336 - 621
Target Start/End: Original strand, 21324408 - 21324695
Alignment:
| Q |
336 |
aggttcacag-ttgctcacggcaaaggtaaggagaaggcttcggattgatcgtgcttgttggatttta--gtgcttgtgtccttttgctaatgttatgta |
432 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21324408 |
aggttcacaggttgctcaaggcaaaggtaaggagaaggcttcagattgatcatgcttgttggattttgttgtgcttgtgtccttttgctaatgttatgta |
21324507 |
T |
|
| Q |
433 |
ttatatattagttgtaatggacctcgatgtttcttgttcattcgactgattatgtataattattttaacatgtagcttgagactgctttgtactttgaat |
532 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
21324508 |
ttatgtacgagttgtaatggacctcgatgtttcttgttcattcgactgattatgtat-attattgtaacacgtagcttgagacaactttgtactctgaat |
21324606 |
T |
|
| Q |
533 |
ctcaacttatgttgtacttctgtattgtataattaatgtatccaatatcagatttaacgcacatgccaaatattctagacacgtttagt |
621 |
Q |
| |
|
||||||||| | |||| ||| |||||||||||||||||||||| ||||| ||||| |||||| ||||||| |||||| ||||||| |
|
|
| T |
21324607 |
ctcaacttaagatgtatttccttattgtataattaatgtatccagtatcatttttaatgcacatattaaatattttagacatgtttagt |
21324695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 14823605 - 14823682
Alignment:
| Q |
241 |
tgtaacatcccactcgtcagtattggaatttcatc---------agtcggaagatataagttcatgaacgataaatat |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
14823605 |
tgtaacatcccactcgtcagtaatggaatttcatccgtcagacgtgtcgaaagatataagttcatgaacgataaatat |
14823682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 22677454 - 22677418
Alignment:
| Q |
240 |
atgtaacatcccactcgtcagtattggaatttcatca |
276 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22677454 |
atgttacatcccactcgtcagtattggaatttcatca |
22677418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 9e-41; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 354 - 621
Target Start/End: Original strand, 9340835 - 9341102
Alignment:
| Q |
354 |
ggcaaaggtaaggagaaggcttcggattgatcgtgcttgttggattttagtgcttgtgtccttttgctaatgttatgtatt-atatattagttgtaatgg |
452 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||||||||| ||| ||| |||||| || | | ||||||| || || || |||||||||||| |
|
|
| T |
9340835 |
ggcaaaggtaagaagaaggctacatattgatcgtgcttgttggattt-agtacttatgtcctgttcttgacgttatgtgtttatgtaatagttgtaatgg |
9340933 |
T |
|
| Q |
453 |
acctcgatgtttcttgtt-cattcgactgattatgtataattattttaacatgtagcttgagactgctttgtactttgaatctcaacttatgttgtactt |
551 |
Q |
| |
|
| |||| || | |||||| |||| ||||||||||||| || | || |||||| | |||||||| |||||||| || ||||||||||||||||||| || |
|
|
| T |
9340934 |
atctcgttgatacttgtttcatttgactgattatgtaaaacttttgtaacatatgacttgagacgactttgtaccttaaatctcaacttatgttgtattt |
9341033 |
T |
|
| Q |
552 |
ctgtattgtataattaatgtatccaatatcagatttaacgcacatgccaaatattctagacacgtttagt |
621 |
Q |
| |
|
|||||||||| |||||||||| | |||||| |||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
9341034 |
-tgtattgtatgattaatgtattgagtatcagttttaacgcacatgctaaatattcttgacacgtttagt |
9341102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 555 - 621
Target Start/End: Complemental strand, 6634350 - 6634284
Alignment:
| Q |
555 |
tattgtataattaatgtatccaatatcagatttaacgcacatgccaaatattctagacacgtttagt |
621 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||| |
|
|
| T |
6634350 |
tattgtataattaatgtatccaatatcagttttaatccacatgctaaatattctagacacatttagt |
6634284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 622
Target Start/End: Original strand, 7173244 - 7173302
Alignment:
| Q |
564 |
attaatgtatccaatatcagatttaacgcacatgccaaatattctagacacgtttagtg |
622 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7173244 |
attaatgtattcagtatcaattttaacgcacatgctaaatattctagacacgtttagtg |
7173302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 469 - 614
Target Start/End: Original strand, 21218505 - 21218650
Alignment:
| Q |
469 |
ttcattcgactgattatgtataattattttaacatgtagcttgagactgctttgtactttgaatctcaacttatgttgtacttctgtattgtataattaa |
568 |
Q |
| |
|
||||||||||| || ||||||||||||| ||| || | ||||||| || ||||||| | |||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
21218505 |
ttcattcgacttatcatgtataattattataaaatatgacttgagatagccttgtactctaaatctcgacttatgttgtacttcagtattgtatatttaa |
21218604 |
T |
|
| Q |
569 |
tgtatccaatatcagatttaacgcacatgccaaatattctagacac |
614 |
Q |
| |
|
|||||| | |||||| | |||||||||| |||||||||||||| |
|
|
| T |
21218605 |
tgtatcaagtatcagttataacgcacatattgaatattctagacac |
21218650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 469 - 583
Target Start/End: Original strand, 21231780 - 21231894
Alignment:
| Q |
469 |
ttcattcgactgattatgtataattattttaacatgtagcttgagactgctttgtactttgaatctcaacttatgttgtacttctgtattgtataattaa |
568 |
Q |
| |
|
||||||||||| || ||||||||||||| |||||| | || ||||| | |||||| | |||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
21231780 |
ttcattcgacttatcatgtataattattataacatatgactggagacagagttgtacactaaatctcgacttatgttgtacttcagtattgtataattaa |
21231879 |
T |
|
| Q |
569 |
tgtatccaatatcag |
583 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
21231880 |
tgtatccagtatcag |
21231894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 22753962 - 22753923
Alignment:
| Q |
241 |
tgtaacatcccactcgtcagtattggaatttcatcagtcg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22753962 |
tgtaacatcccactcgtcagtattggaatttcatcagtcg |
22753923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 438
Target Start/End: Original strand, 21218392 - 21218472
Alignment:
| Q |
357 |
aaaggtaaggagaaggcttcggattgatcgtgc-ttgttggattttagtgcttgtgtccttttgctaatgttatgtattatat |
438 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||| ||||||| || |||| |||| | |||||||||||||||| |
|
|
| T |
21218392 |
aaaggtaaggagaaggcttcagactgatcgtgctttgttgga-tttagtg-ttatgtcgctttgttgatgttatgtattatat |
21218472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 528 - 619
Target Start/End: Original strand, 25190693 - 25190782
Alignment:
| Q |
528 |
tgaatctcaacttatgttgtacttctgtattgtataattaatgtatccaatatcagatttaacgcacatgccaaatattctagacacgttta |
619 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||| |
|
|
| T |
25190693 |
tgaatctcaacttatgttgt--ttccgtattgtataattaatgtatccaatatcagttataacacacatgttgaatattctagacactttta |
25190782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 614
Target Start/End: Original strand, 11246543 - 11246629
Alignment:
| Q |
526 |
tttgaatctcaacttatgttgtacttctgtattgtataattaatgtatccaatatcagatttaacgcacatgccaaatattctagacac |
614 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||| ||||||||||| |||||| | ||||||||||| |||||||||||||| |
|
|
| T |
11246543 |
tttgaatctcaactcatgttgt--ttccgtattgtataactaatgtatccagtatcagttataacgcacatgttgaatattctagacac |
11246629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 11245911 - 11245953
Alignment:
| Q |
345 |
gttgctcacggcaaaggtaaggagaaggcttcggattgatcgt |
387 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11245911 |
gttgctcgaggcaaaggtaaggagaaggcttcggattgatcgt |
11245953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 11246356 - 11246410
Alignment:
| Q |
345 |
gttgctcacggcaaaggtaaggagaaggcttcggattgatcgtgct-tgttggat |
398 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
11246356 |
gttgctcgaggcaaaggtaaggagaaagcttcagattgatcgtgctatgttggat |
11246410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 614
Target Start/End: Original strand, 11246123 - 11246184
Alignment:
| Q |
553 |
tgtattgtataattaatgtatccaatatcagatttaacgcacatgccaaatattctagacac |
614 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| | |||| |||||| |||||||||||||| |
|
|
| T |
11246123 |
tgtattgtataactaatgtatccagtatcagttataacacacatgttgaatattctagacac |
11246184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 16104 - 16027
Alignment:
| Q |
241 |
tgtaacatcccactcgtcagtattggaatttcatc---------agtcggaagatataagttcatgaacgataaatat |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
16104 |
tgtaacatcccactcgtcagtaatggaatttcatccgtcagacgtgtcgaaagatataagttcatgaacgataaatat |
16027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 613
Target Start/End: Complemental strand, 36321659 - 36321599
Alignment:
| Q |
553 |
tgtattgtataattaatgtatccaatatcagatttaacgcacatgccaaatattctagaca |
613 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || | ||||||||||| |||||||||||||| |
|
|
| T |
36321659 |
tgtattgtataattaatgcatccagtattagttataacgcacatgttaaatattctagaca |
36321599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 29791444 - 29791512
Alignment:
| Q |
334 |
tcaggttcacag-ttgctcacggcaaaggtaaggagaaggcttcggattgatcgtgc-ttgttggattt |
400 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
29791444 |
tcaggttcacaggttgctcgaggcaaagggaaggagaaggcttcggattaatcatgctttgttggattt |
29791512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 619
Target Start/End: Original strand, 29791645 - 29791734
Alignment:
| Q |
528 |
tgaatctcaacttatgttgtacttctgtattgtataattaatgtatccaatatcagatttaacgcacatgccaaatattctagacacgttta |
619 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||| |||||||||| |||| | |||| |||||| |||||||| ||||| |||| |
|
|
| T |
29791645 |
tgaatctcgacttatgttgt--tttcgtattgtataattattgtatccaatgtcagttataacacacatgttgaatattcttgacacattta |
29791734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University