View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12934_low_3 (Length: 520)
Name: NF12934_low_3
Description: NF12934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12934_low_3 |
 | |
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| [»] scaffold0002 (2 HSPs) |
| | |
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| [»] scaffold0380 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 9 - 513
Target Start/End: Original strand, 13219260 - 13219764
Alignment:
| Q |
9 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
13219260 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagatattttagaagca |
13219359 |
T |
|
| Q |
109 |
catattcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13219360 |
catattcctccggggggtagattgggccgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcat |
13219459 |
T |
|
| Q |
209 |
taggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13219460 |
taggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactca |
13219559 |
T |
|
| Q |
309 |
tcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgta |
408 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
13219560 |
tcatcaatacattgcaggatttattatgacaggggcttttgctcatggagcgatattttttattcgggattacaatcccgaacagaatgaggataatgta |
13219659 |
T |
|
| Q |
409 |
ttggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccatgatg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
13219660 |
ttggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccataatg |
13219759 |
T |
|
| Q |
509 |
atgtc |
513 |
Q |
| |
|
||||| |
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|
| T |
13219760 |
atgtc |
13219764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 13217036 - 13217095
Alignment:
| Q |
9 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13217036 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaa |
13217095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 47842098 - 47842150
Alignment:
| Q |
274 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcagg |
326 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47842098 |
caagactttactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 47842174 - 47842226
Alignment:
| Q |
269 |
tagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
321 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47842174 |
tagcacaggattttactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
342 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
402 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||| ||||||||| ||||||||||| |
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|
| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 500
Target Start/End: Complemental strand, 238445 - 237958
Alignment:
| Q |
13 |
catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagcacata |
112 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
238445 |
catcatttagctattgcatttatttttctcattgccggtcacatgtatcgaactaacttcggaattgggcacagtattaaagatcttttagaagcgcata |
238346 |
T |
|
| Q |
113 |
ttcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcattagg |
212 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| |
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|
| T |
238345 |
ctcctccggggggtcgattagggcgtgggcataagggcctttatgacacaatcaacaattcgattcattttcagttaggtcttgctctagcttctttagg |
238246 |
T |
|
| Q |
213 |
ggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcat |
312 |
Q |
| |
|
||| |||||||| || ||||||||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
238245 |
ggttattacttccttagtagctcaacatatgtactctttacctccttatgcattcatagcacaagactttactactcaagctgctttatatactcatcac |
238146 |
T |
|
| Q |
313 |
caatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattgg |
412 |
Q |
| |
|
||||| ||||| || || || |||||||||||||||||||||||||| || ||||| ||| | ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
238145 |
caatatattgcggggttcatcatgacaggggcttttgctcatggagctatttttttcattagggattacaatccggaacagaatgaggataatgtattgg |
238046 |
T |
|
| Q |
413 |
caagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgt |
500 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| |||||||| |
|
|
| T |
238045 |
caagaatgttagaccataaagaagctatcatatctcatttaagttgggctagcctctttctaggattccataccttgggcctttatgt |
237958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 240669 - 240602
Alignment:
| Q |
13 |
catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgg |
80 |
Q |
| |
|
||||||||||||||||| |||||||| || || || |||||||||||||| || |||| |||||||| |
|
|
| T |
240669 |
catcatttagctattgctattcttttcctaatcgcaggtcatatgtataggaccaactggggtattgg |
240602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 170 - 512
Target Start/End: Original strand, 10996334 - 10996673
Alignment:
| Q |
170 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
10996334 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttacctacttatgcgtttat |
10996433 |
T |
|
| Q |
270 |
agcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatatttttt |
369 |
Q |
| |
|
||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||| ||||| ||||| |
|
|
| T |
10996434 |
agcgcaagactttacagctcaagctgcggtatatactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatggaacgata-ttttt |
10996532 |
T |
|
| Q |
370 |
attcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctat |
469 |
Q |
| |
|
||| | ||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
10996533 |
atttgagattacaatcccgaacataatgagaataatgtattggca--gatgttagagcacaaagaagctatcatatcccatttaagttgagccatcctat |
10996630 |
T |
|
| Q |
470 |
ttctggggttccatactttgggactttatgtccatgatgatgt |
512 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10996631 |
ttctagggttccatactttgggactttatgtccataatgatgt |
10996673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
285 |
tactcaagctgcgttatatactcatcatcaatacattgc |
323 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 18177058 - 18176963
Alignment:
| Q |
9 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttaga |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || |||||| ||| |||||||| |
|
|
| T |
18177058 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttaga |
18176963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
285 |
tactcaagctgcgttatatactcatcatcaatacattgc |
323 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 39047942 - 39048001
Alignment:
| Q |
9 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
39047942 |
acatcatcatttagctattgcaattctttttctcattaccggtcatatgtatagaactaa |
39048001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 14541411 - 14541323
Alignment:
| Q |
12 |
tcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| | |||||| || |||||||||| |||| |
|
|
| T |
14541411 |
tcatcattttgctattgcaattctttttctcattgtcggtcatatgtataaaactaactgggatattggtcatggtataaaagatattt |
14541323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 32566683 - 32566650
Alignment:
| Q |
212 |
gggtcattacttctttggtagctcaacacatgta |
245 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
32566683 |
gggtcattacttctttggtagctcaatacatgta |
32566650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 15664 - 15723
Alignment:
| Q |
9 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa |
68 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
15664 |
acatcatcatctagctattgcaattctttttcacattgccagtcatatgtatagaactaa |
15723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 39386263 - 39386308
Alignment:
| Q |
9 |
acatcatcatttagctattgcaattctttttctcattgctggtcat |
54 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
39386263 |
acatcatcatttagctattgtaattctttttcgcattgccggtcat |
39386308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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