View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12934_low_5 (Length: 429)

Name: NF12934_low_5
Description: NF12934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12934_low_5
NF12934_low_5
[»] chr6 (21 HSPs)
chr6 (19-221)||(14046082-14046285)
chr6 (241-409)||(13473819-13473987)
chr6 (55-223)||(13474167-13474336)
chr6 (237-409)||(14109538-14109710)
chr6 (238-413)||(13931429-13931604)
chr6 (235-413)||(14046465-14046642)
chr6 (245-409)||(14024351-14024515)
chr6 (235-409)||(14021775-14021953)
chr6 (19-155)||(14021350-14021486)
chr6 (235-409)||(14014210-14014384)
chr6 (23-180)||(14109147-14109303)
chr6 (19-140)||(14083399-14083522)
chr6 (269-409)||(13893835-13893975)
chr6 (237-413)||(13910925-13911100)
chr6 (235-413)||(14083729-14083908)
chr6 (339-413)||(13863657-13863731)
chr6 (282-409)||(13876131-13876258)
chr6 (144-217)||(14021508-14021582)
chr6 (113-210)||(14024255-14024353)
chr6 (17-110)||(13931095-13931190)
chr6 (56-110)||(14013878-14013932)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 14046082 - 14046285
Alignment:
Q  19 aaaccattcatctccctggagtagatctttgacttcacaccttaatctgattcaccaccaatgcattatcgagtaccctttagtgaagatgccccctata 118  Q
    |||||||| |||| |||  |||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||| ||| |||||||||  |||||||    
T  14046082 aaaccatttatcttcctatagtagatctttgacttcacacctttatctgattcaccaccaacgcactaacgagtaccattttgtgaagatgtgccctata 14046181  T
Q  119 taatagtttaagtgtttacctcatgagatttaaagtccaaaatataaa-ttttagaaaacttgtaacttcaaacacaatatcatgaaagataacttttga 217  Q
    |||||||||||||||| ||||||| ||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14046182 taatagtttaagtgttaacctcattagatacaaagtccaaaatataaatttttagaaaacttgtaacttgaaacacaatatcatgaaagataacttttga 14046281  T
Q  218 acat 221  Q
    ||||    
T  14046282 acat 14046285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 241 - 409
Target Start/End: Complemental strand, 13473987 - 13473819
Alignment:
Q  241 atgttaaatgtaagtatatatgagatgtctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattttatccatcaa 340  Q
    ||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| |||| | || ||||||||||||||||| | ||||||||||||||| ||    
T  13473987 atgttaaatgtaaatatatatgaaatgtctagagttaaagtattattaccagttaatctttaagcccccatctgcatttgacgtaaattttatccattaa 13473888  T
Q  341 attgttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacacccca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  13473887 attgttcatgaacttgaaataagcatgtctccaggaacgcttgattaggattgatccaaatacacccca 13473819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 13474336 - 13474167
Alignment:
Q  55 acaccttaatctgattcaccaccaatgcattatcgagtaccctttagtgaagatgccccctatataatagtttaagtgtttacctcatgagatttaaagt 154  Q
    |||| |||||| | || |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||| |||| ||||||    
T  13474336 acacgttaatccggttaaccaccaatgcactatggagtaccctttagtgaagatgccccctatataatagtttaagtgttaaggtcattagatataaagt 13474237  T
Q  155 ccaaaatataaatt-ttagaaaacttgtaacttcaaacacaatatcatgaaagataacttttgaacatat 223  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13474236 ccaaaatataaattcctagaaaacttgtaacttgaaacacaatatcatgaaagataacttttgaacatat 13474167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 237 - 409
Target Start/End: Original strand, 14109538 - 14109710
Alignment:
Q  237 tttgatgttaaatgtaagtatatatgagatgtctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattttatcca 336  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||| || || |||||||||||||| | ||||||| ||||||    
T  14109538 tttgatgttaaatgtaagtatatatgagatgtctaaagttaaagtataattaccggttaacctttgagtccccatctgcatttcacgtaaattgtatcca 14109637  T
Q  337 tcaaattgttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacacccca 409  Q
      || |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| || |||||    
T  14109638 ctaagttgttcatgaacttgaaataagcatgtctccaagagcgcttgattaggattgagccaaacactcccca 14109710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 238 - 413
Target Start/End: Original strand, 13931429 - 13931604
Alignment:
Q  238 ttgatgttaaatgtaagtatatatgagatgtctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattttatccat 337  Q
    |||||||||||||||||||||||||||| ||  | ||||| ||||||||||||| |||| |||| ||||  ||||||||||| | |||||| |||||||     
T  13931429 ttgatgttaaatgtaagtatatatgagaggttaacagttaaagtattattaccagttaatcattgagccatcatctgcatttgacgtaaatattatccac 13931528  T
Q  338 caaattgttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacaccccagaag 413  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| || |||||||||    
T  13931529 taaattgttcatgaacttgaaataagcatgtctccaagaacgcttgattaggattgaaccaaaaacgccccagaag 13931604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 235 - 413
Target Start/End: Original strand, 14046465 - 14046642
Alignment:
Q  235 tatttgatgttaaatgtaagtatatatgagatgtctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattttatc 334  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||  |||| ||||  | ||||||||  |||| |  ||||| |||||    
T  14046465 tatttgatgttaaatgtaagtatatatgagatgtctaaa-ttaaagtgttattaccggttaatcattgcgtccccatctatatttgacataaatattatc 14046563  T
Q  335 catcaaattgttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacaccccagaag 413  Q
    ||  ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  14046564 cactaaattgttcatgaacctgaaataagcatgtctccaagaacgcttgattaggattgagccaaagacaccccagaag 14046642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 245 - 409
Target Start/End: Original strand, 14024351 - 14024515
Alignment:
Q  245 taaatgtaagtatatatgagatgtctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattttatccatcaaattg 344  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||  |||| | || |||| |||||||||||| | ||||||   |||||  || |||    
T  14024351 taaatgtaagtatatatgagaggtctaaagttaaagtattattaccggttaatctttgagccaccatctgcatttcacgtaaatagcatccactaagttg 14024450  T
Q  345 ttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacacccca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||    
T  14024451 ttcatgaacttgaaataagcatgtctccaggaacgcttgattaggattgagccaaacactcccca 14024515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 235 - 409
Target Start/End: Original strand, 14021775 - 14021953
Alignment:
Q  235 tatttgatgttaaatgtaagtatatatg----agatgtctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattt 330  Q
    |||||||||||| ||||||||||||||     ||||||||||||||| ||||| ||||||| |||||| || ||||||||||||||||| | |||||||     
T  14021775 tatttgatgttacatgtaagtatatatatagaagatgtctaaagttaaagtataattaccagttaacctttgagcccccatctgcatttcacgtaaattg 14021874  T
Q  331 tatccatcaaattgttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacacccca 409  Q
    ||||||  || |||||||||||||||||||||||||||||||| |||||||  |||| |||||||||||| || |||||    
T  14021875 tatccactaagttgttcatgaacttgaaataagcatgtctccatgaacgctatattaggattgagccaaacactcccca 14021953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 14021350 - 14021486
Alignment:
Q  19 aaaccattcatctccctggagtagatctttgacttcacaccttaatctgattcaccaccaatgcattatcgagtaccctttagtgaagatgccccctata 118  Q
    ||||||||||||| ||  ||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  14021350 aaaccattcatcttccaagagtaaatctttgactgcacaccttaatctgattcaccaccaacgcactatcgagtaccctttagtgaagataccccctata 14021449  T
Q  119 taatagtttaagtgtttacctcatgagatttaaagtc 155  Q
    | |||||||||||||| || |||| |||| |||||||    
T  14021450 tgatagtttaagtgttaacgtcattagatataaagtc 14021486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 409
Target Start/End: Original strand, 14014210 - 14014384
Alignment:
Q  235 tatttgatgttaaatgtaagtatatatgagatgtctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattttatc 334  Q
    |||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||| |||  | || |||  || ||||||||| | |||||| |||||    
T  14014210 tatttgatgtaaaatgtaagtatatatgagattgctaaagttaaagtattattaccagttagtctttgagctaccttctgcatttcacgtaaatattatc 14014309  T
Q  335 catcaaattgttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacacccca 409  Q
    |   ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||| |||||    
T  14014310 ccataaattgttcatgaacttgaaataagcatgtcgccaagaacgcttgattaggattgaaccaaatactcccca 14014384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 14109147 - 14109303
Alignment:
Q  23 cattcatctccctggagtagatctttgacttcacaccttaatctgattcaccaccaatgcattatcgagtaccctttagtgaagatgccccctatataat 122  Q
    ||||||||| ||| |||||| ||||||||| ||||||||||| ||||||||||| || ||| ||||||||||||||||||||| ||||||||||||| ||    
T  14109147 cattcatcttcctagagtaggtctttgactgcacaccttaatttgattcaccacgaacgcactatcgagtaccctttagtgaa-atgccccctatat-at 14109244  T
Q  123 agtttaagtgtttacctcatgagatttaaagtccaaaatataaa-ttttagaaaacttg 180  Q
    |||||||||||| ||||| | | || ||||||| |||||||||| ||||||||||||||    
T  14109245 agtttaagtgttaacctctttatatataaagtctaaaatataaatttttagaaaacttg 14109303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 14083399 - 14083522
Alignment:
Q  19 aaaccattcatctccctggagtagatctttgacttcacaccttaatctga--ttcaccaccaatgcattatcgagtaccctttagtgaagatgcccccta 116  Q
    ||||||| ||||| ||| ||| || |||||||||  ||||||||||||||  | ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  14083399 aaaccatacatcttcctagagcaggtctttgactgaacaccttaatctgagatccaccaccaatgcactatcgagtaccctttagcgaagatgcccccta 14083498  T
Q  117 tataatagtttaagtgtttacctc 140  Q
    |||||||||||||||||| |||||    
T  14083499 tataatagtttaagtgttaacctc 14083522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 409
Target Start/End: Complemental strand, 13893975 - 13893835
Alignment:
Q  269 ctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattttatccatcaaattgttcatgaacttgaaataagcatgt 368  Q
    ||||||||| || | ||||||| ||||| | || |||| |||||||||||| | |||||| |||||||  |||||||||| |||||||||||||||||||    
T  13893975 ctaaagttaaagaactattacctattaatctttgagccaccatctgcatttgacgtaaatattatccactaaattgttcaagaacttgaaataagcatgt 13893876  T
Q  369 ctccaggaacgcttgattaagattgagccaaatacacccca 409  Q
    | ||| ||||||||||||| |||||| |||||||| |||||    
T  13893875 cgccaagaacgcttgattaggattgaaccaaatactcccca 13893835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 13910925 - 13911100
Alignment:
Q  237 tttgatgttaaatgtaagtatatatgagatgtctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattttatcca 336  Q
    |||||| | |||| ||| ||||||||||| ||  ||||| | |||||||| |||  |||| | || |||| |||||||||||| ||||||||  |||||     
T  13910925 tttgatatgaaatataattatatatgagaggttaaaagtaa-agtattatcaccggttaatccttgagccaccatctgcatttcatgtaaatactatccc 13911023  T
Q  337 tcaaattgttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacaccccagaag 413  Q
      ||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  13911024 ctaaattgttcatgaatctgaaataagcatgtctccatgaacgcttgattaggattgagccaaatactccccagaag 13911100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 235 - 413
Target Start/End: Original strand, 14083729 - 14083908
Alignment:
Q  235 tatttgatgttaaatgtaagtatatatgaga-tgtctaaagttacagtattattaccaattaaccatttagcccccatctgcatttaatgtaaattttat 333  Q
    ||||||||||| |||| ||| ||||||||||  |   ||||||| ||||||||||||| ||| ||  | |||| || ||||||||| | |||||| ||||    
T  14083729 tatttgatgtttaatgcaagaatatatgagagcgcaaaaagttaaagtattattaccagttagcctctaagccaccttctgcatttcacgtaaatattat 14083828  T
Q  334 ccatcaaattgttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacaccccagaag 413  Q
    |    ||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||||||| |||||||||    
T  14083829 ctgctaaattgttcatgaacttgaaataagcatgtctccaagtgcgcttgattaggattgagccaaatactccccagaag 14083908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 13863731 - 13863657
Alignment:
Q  339 aaattgttcatgaacttgaaataagcatgtctccaggaacgcttgattaagattgagccaaatacaccccagaag 413  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  13863731 aaattgttcaagaacttgaaataagcatgtctccaggagcgcttgattaggattgagccaaatacaccccagaag 13863657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 409
Target Start/End: Complemental strand, 13876258 - 13876131
Alignment:
Q  282 attattaccaattaaccatttagcccccatctgcatttaatgtaaattttatccatcaaattgttcatgaacttgaaataagcatgtctccaggaacgct 381  Q
    ||||||||| ||||| | || |||| |||||||||||| | |||||| | |||||  |||||||||| |||||||||||||||||||| ||| |||||||    
T  13876258 attattacctattaatctttgagccaccatctgcatttcacgtaaatatcatccactaaattgttcaagaacttgaaataagcatgtcgccaagaacgct 13876159  T
Q  382 tgattaagattgagccaaatacacccca 409  Q
    |||||| |||||| |||||||| |||||    
T  13876158 tgattaggattgaaccaaatactcccca 13876131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 14021508 - 14021582
Alignment:
Q  144 agatttaaagtccaaaatataaatt-ttagaaaacttgtaacttcaaacacaatatcatgaaagataacttttga 217  Q
    |||| |||||||  ||||| ||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  14021508 agatataaagtctgaaatacaaattattagaaaacttgtaacttgaaacataatatcatcaaagataacttttga 14021582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 14024255 - 14024353
Alignment:
Q  113 cctatataatagtttaagtgtttacctcatgagatttaaagtccaaaatataaa-ttttagaaaacttgtaacttcaaacacaatatcatgaaagataa 210  Q
    ||||||||||||||||||| || ||| | | |||| ||||||| ||||| |||| ||||| |||| ||| ||||| ||| |||||||||||||||||||    
T  14024255 cctatataatagtttaagtattaaccactttagatataaagtctaaaatttaaaattttaaaaaagttgaaacttgaaaaacaatatcatgaaagataa 14024353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 13931095 - 13931190
Alignment:
Q  17 ataaaccattcatctccctggagtagatctttgacttcaca--ccttaatctgattcaccaccaatgcattatcgagtaccctttagtgaagatgc 110  Q
    |||||||||||||||  || ||||||  |||| ||| ||||  |||||||||||| ||||||||| | | |||||||||||||| ||| |||||||    
T  13931095 ataaaccattcatctttctagagtaggacttttactgcacagaccttaatctgatccaccaccaacgaactatcgagtacccttcagtaaagatgc 13931190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 14013878 - 14013932
Alignment:
Q  56 caccttaatctgattcaccaccaatgcattatcgagtaccctttagtgaagatgc 110  Q
    |||||||||||||| ||||||||||||| ||||||| |  ||||||| |||||||    
T  14013878 caccttaatctgatccaccaccaatgcactatcgagcaatctttagtcaagatgc 14013932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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