View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12934_low_6 (Length: 412)
Name: NF12934_low_6
Description: NF12934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12934_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 106 - 394
Target Start/End: Complemental strand, 23145474 - 23145186
Alignment:
| Q |
106 |
gagacgatgatcccaaatcgccactcagttccgcctccactcccatacactccaccggatgcaacagccacggatttaaagagaaaataaaacttttaca |
205 |
Q |
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| T |
23145474 |
gagacgatgatcccaaatcgccactcagttccacctccactcccatacactccaccggatgaaacagccacggatttaaagagaaaataaaacttttaca |
23145375 |
T |
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| Q |
206 |
ccttgattgaataactcgatgaaaagatttttgcttccttcaccattttttcccaattaaacccatcttgatcgaaaatcctggcattcctggcattcca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
23145374 |
ccttgattgaataactcgatgaaaagatttttgcttccttcactactttttcccaattaaacccatcttgatcgaaaatcatggcattattggctttcca |
23145275 |
T |
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| Q |
306 |
aattgtagatatatttgctcaacaaattaagcctaatatatccttcaccttcttagtacttatcaccagccctttcaactgtttaaggt |
394 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23145274 |
gattatagatatatttgcgcaacaaattaagcctaatatatccttcaccttcttagtacttaacaccagccctttcaactgtttaaggt |
23145186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 23145550 - 23145461
Alignment:
| Q |
1 |
cagtagagacaaaacagatacagaaaaactcctaaagcctgtgcagaaagcataatacaaaagaagcaagaaacaagagacgatgatccc |
90 |
Q |
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| T |
23145550 |
cagtagagagaaaacagatacagaaaaactcctaaagcctgtgcagaaagcataatacaaaagaagcaggaaacaagagacgatgatccc |
23145461 |
T |
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