View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12934_low_8 (Length: 294)
Name: NF12934_low_8
Description: NF12934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12934_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 40440459 - 40440736
Alignment:
| Q |
2 |
caacaaggtgggaagatgcatgagtacgcttaaaaattcgaactcgttttaacccaagggtcaatacttcttaacattcccttatcatttt-cttgttgg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40440459 |
caacaaggtgggaagatgcaagagtacgatgaaaaattcgaactcgttttaacccaagggtcaatacttcttaacattcccttatcatttttcttgttgg |
40440558 |
T |
|
| Q |
101 |
tttggaacatagtacacatatgcatgtgcgcatgttcaaccccacttcaatacaacaagctgcaagcttagcttgtccctataaatcatccaaacatgca |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40440559 |
tttggaacatagcacacatatgcatgtgcgtatgttcagccacacttcgatacaacaagctgcaagcttagcttgtccctataaatcatccaaacatgca |
40440658 |
T |
|
| Q |
201 |
ccccttaaacccttaaatcaccctccctgttcacctttcaaacctccatcctcaaacactaaacctaaccccaccaat |
278 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40440659 |
ccccttaaacccttcaatcaccctccctattcacctttcaaacctccatcctcaaacactaaacctaaccccaccaat |
40440736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University