View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_high_1 (Length: 629)
Name: NF12935_high_1
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 22 - 621
Target Start/End: Complemental strand, 9800113 - 9799512
Alignment:
| Q |
22 |
tctagcttcagaaaggatatatgatgtactttaaccagtagcttagaattgtgaatgaaaaaggaaccaaaagttggaacaaagaaagagtttaagcatt |
121 |
Q |
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| T |
9800113 |
tctagcttcagaaaggatatatgatgtaatttaaccagtagcttagaattgtgaatgaagaaggaaccaaaagtaggaacaaagaaagagtttaagcatt |
9800014 |
T |
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| Q |
122 |
gtggagaaaatggacaaggcactaaaggaaagtggagaagttaatcaa-gggaagatgcaaataaatttcaaaaagnnnnnnn-actcaaaaaggcaagg |
219 |
Q |
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| T |
9800013 |
gtggagaaaatggacaaggcactaaaggaaagtggagaagttaatcaaagggaagatgcaaataaatttcaaaaagttttttttactcaaaaaggcaagg |
9799914 |
T |
|
| Q |
220 |
ttaatacttaatggtatatagatatggtattgaaaaatatggttcactgattaacaaatcacactcctcacaagttggatattttggccgacttcttgtc |
319 |
Q |
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| T |
9799913 |
ttaatacttaatggtatatagatatggtattgaaaaatatggttcactgattaaccaatcacactcctcacaagttggatattttggccgacttcttgtc |
9799814 |
T |
|
| Q |
320 |
nnnnnnncttcaaattatttgtacgggacaagagggacaattggaaatgatttatagccactgaaaacatgtgagaaattttggtacaaataagaagaag |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9799813 |
tttttttcttcaaattatttgtacgggacaagagggacaattggaaatgatttatagccactgaaaacatgtgagaaattttggtacaaataagaagaag |
9799714 |
T |
|
| Q |
420 |
ataattgtcactgtgaaagtggacacaacaaaacaatcttgtgagttcatacaaaagaaacacgaacatcttgtgatggtgtgagtttcattatttcttg |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9799713 |
ataattgtcactgtgaaagtggacacaacaaaacaatcttgtgagttcatacaaaagaaacacgaacatcttgtgatggtgtgagtttcattatttcttg |
9799614 |
T |
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| Q |
520 |
actttggttgctctctatgtccatttgtatagtggattgatgtggaagtgggtatgattcttaaatagaaagccaccactctcatagtgaaatgatgatg |
619 |
Q |
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| T |
9799613 |
actttggtttctctttatgtccatttgtatagtggattgatgtggaagtgggtatgattcttaaatagaaagccaccactctcatagtgaaatgatgatg |
9799514 |
T |
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| Q |
620 |
tc |
621 |
Q |
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| T |
9799513 |
tc |
9799512 |
T |
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