View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_high_10 (Length: 397)
Name: NF12935_high_10
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 53005162 - 53004799
Alignment:
| Q |
18 |
caattaagacctaacaagtaacaatgataatttctagttttattttcttaagaacaaacactttattgttttaaaagtattaaatcctaaaggactcatg |
117 |
Q |
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| T |
53005162 |
caattaagacctaacaagtaacaacgataatttctagttttattttcttaagaacaaacactttattgttttataagtattaaatcctaaaggactcatg |
53005063 |
T |
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| Q |
118 |
tcttgacactctcagttgtccatctatatttgttttatctgaaaagtccaaacgagctttaactaaatatattttaatttcacgttttagttaaaagttt |
217 |
Q |
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| T |
53005062 |
tcttgacactctcagttgtccatctatatttgttttatctgaaaagtccaaacgagctttaactaaatatattttaatttcacgttttagttaaaagttt |
53004963 |
T |
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| Q |
218 |
cgtaaaatttcaaattgagcgtgtcagccaaacactacgtgaatttatgcatgtattcagttaggtatagatacacttctgataaaacaatatcttttta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53004962 |
cgtaaaatttcaaattgagcgtgtcagccaaacactacgtgaatttatccatgtattcagttaggtatagatacacttctgataaaacaatatcttttta |
53004863 |
T |
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| Q |
318 |
attttaaccgtccaaaacaaggtaaggaagggtgtgagtcattatcataaaaaagaaagttaac |
381 |
Q |
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| T |
53004862 |
attttaaccgtccaaaacaaggtaaggaagggtgtgagtcattatcataaaaaagaaagttaac |
53004799 |
T |
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