View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_high_16 (Length: 302)
Name: NF12935_high_16
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 284
Target Start/End: Complemental strand, 41402143 - 41401866
Alignment:
| Q |
5 |
taattctattttgttttggaataagtaagatttggctaacgtataattatcataaattcatataaatggtagcttagtgaggaagtaataggaagcaatg |
104 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41402143 |
taattctattttgttttgaaataagtaagatttggctaatgtataattatcataaattcatataaatggtagcttggtgaggaagtaataggaagcaatg |
41402044 |
T |
|
| Q |
105 |
ttcccatcataagttttgacaaaagtaaatgggaggtattataaaatatatttccgattcaacatggtagttagcattaagtaagattagtagtattgga |
204 |
Q |
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|||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
41402043 |
ttcccatcgtaagttttgac-aaagtagatgggaggtcttataaaatatatttccgagtcaacatggtacttagcattaagcaagattagtagtattgga |
41401945 |
T |
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| Q |
205 |
tagatgattttaaataggtagatttatggtaacacaaagtaaaatgcaacttcgttaatgaacatattcaaatgtggatt |
284 |
Q |
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|| || |||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
41401944 |
tatataattttaaataggta-attaatggtaacacaaagtaaaatgcaacttcattaatgaacaaatttaaatgtggatt |
41401866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 26416244 - 26416513
Alignment:
| Q |
5 |
taattctattttgttttggaataagtaagatttggctaacgtataattatcataaattcatataaatggtagcttagtgaggaagtaataggaagcaatg |
104 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
26416244 |
taattctattttgttttggattaagtaagatttggctaacgtataatcatcataaattcatataaatggtagcttggtgagga----------agcaatg |
26416333 |
T |
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| Q |
105 |
ttcccatcataagttttgacaaaagtaaatgggaggtattataaaatatatttccgattcaacatggtagttagcattaagtaagattagtagtattgga |
204 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||| ||||||||||| |||||| |
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| T |
26416334 |
ttcccatcgtaagttttgacaaaagtaaatgggaggtattataaaatatgtttccgagtcaatatggtacttagcattaagcaagattagtagcattgga |
26416433 |
T |
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| Q |
205 |
tagatgattttaaataggtagatttatggtaacacaaagtaaaatgcaacttcgttaatgaacatattcaaatgtggatt |
284 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26416434 |
tagatgattttaaataggtagatttatggtaacataaagtaaaatgcaacttcattaatgaacatattcaaatgtggatt |
26416513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 284
Target Start/End: Complemental strand, 10706352 - 10706074
Alignment:
| Q |
5 |
taattctattttgttttggaataagtaagatttggctaacgtataattatcataaattcatataaatggtagcttagtgaggaagtaataggaagcaatg |
104 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||||| |
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| T |
10706352 |
taattctattttgttttggaataagtaagatttggctaacgtataattatcataaatttatataaatgatagcttggtgaggaagtaacaggaagcaatg |
10706253 |
T |
|
| Q |
105 |
ttcccatcataagttttgacaaaagtaaatgggaggtattataaaatatatttccgattcaacatggtagttagcattaagtaagattagtagtattgga |
204 |
Q |
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|||||||| ||||||||||| |||||| |||||| || ||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
10706252 |
ttcccatcgtaagttttgac-aaagtagatgggaagtcttataaaatatatttttgagtcaacatggtacttagcattaagcaagattagtagtattgga |
10706154 |
T |
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| Q |
205 |
tagatgattttaaataggtagatttatggtaacacaaagtaaaatgcaacttcgttaatgaacatattcaaatgtggatt |
284 |
Q |
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|| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| ||| | ||||||||| |
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| T |
10706153 |
tatatgattttaaataggtaaattaatggtaacacaaagtaaaatgcaacttcattaatgaacaaatttatatgtggatt |
10706074 |
T |
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