View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12935_high_2 (Length: 536)
Name: NF12935_high_2
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 37382547 - 37383067
Alignment:
| Q |
1 |
gggtgctgcttatcaagaatctggtcgagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37382547 |
gggtgctgcttatcaagaatctggtcgagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgta |
37382646 |
T |
|
| Q |
101 |
aatacaaagttaggagcaggaagagcttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtactggcactactaacttactgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37382647 |
aatacaaagttaggagcaggaagagcttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtactggcactactaacttactgt |
37382746 |
T |
|
| Q |
201 |
cacaacatttttatcatatcattgacaacaatcatgatgattttgaatttacaaactattgattgattatacattcatgtattaatttggaattgcatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37382747 |
cacaacatttttatcatatcattgacaacaatcatgatgattttgaatttacaaactattgattgattatacattcatgtattaatttggaattgcatta |
37382846 |
T |
|
| Q |
301 |
tcatgtacaagaatatacacagttttgcctatgcttcacagtaatatcgaaagattttatgacttgcttgcagtgaaacatgactgtgtgtttggagagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37382847 |
tcatgtacaagaatatacacagttttgcctatgcttcacagtaatatcgaaagattttatgacttgcttgcagtgaaacatgactgtgtgtttggagagg |
37382946 |
T |
|
| Q |
401 |
acttggatttaagtgagataacctatgtatctgaggtattctttagtttccactttcttactttcatcactaccacttgtttttgtataaacactcgaga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37382947 |
acttggatttaagtgagataacctatgtatctgaggtattctttagtttccactttcttactttcatcactaccacttgtttttgtataaacgctcgaga |
37383046 |
T |
|
| Q |
501 |
tctctatattttcactatgat |
521 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37383047 |
tctctatattttcactatgat |
37383067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 37375208 - 37375696
Alignment:
| Q |
1 |
gggtgctgcttatcaagaatctggtcgagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37375208 |
gggtgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgta |
37375307 |
T |
|
| Q |
101 |
aatacaaagttaggagcaggaagagcttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtactggcactactaacttactgt |
200 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37375308 |
aatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgt |
37375407 |
T |
|
| Q |
201 |
cacaacatttttatcatatcattgacaacaatcatgatgattttgaatttacaaactattgattgattatacattcatgtattaatttggaattgcatta |
300 |
Q |
| |
|
| ||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
37375408 |
ctcaacatttttatcat-------------atcatgatgattttaaatctacaaagtattgattgattatacattcatgtattaatttaaatttgcatta |
37375494 |
T |
|
| Q |
301 |
tcatgtacaaga--atatacacagttttgcctatgcttcacagtaatatcgaaagattttatgacttgcttgcagtgaaacatgactgtgtgtttggaga |
398 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||| ||||| | | ||||||||||||||||| ||||||||||||||||| ||||||||||| || |
|
|
| T |
37375495 |
tcatgtacaagaatatatagacagttctgcctatgctttgcagtagttttgaaagattttatgactttcttgcagtgaaacatgattgtgtgtttggcga |
37375594 |
T |
|
| Q |
399 |
ggacttggatttaagtgagataacctatgtatctgaggtattct--ttagtttccactttcttactttcatcactaccacttgtttttgtataaacactc |
496 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
37375595 |
gaactttgatttaaatgagataacctatgtatctgaggtattctgatcagtttcaactatcttactttcatcactactacttgttcttgtaaaaacactc |
37375694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 37360391 - 37360650
Alignment:
| Q |
1 |
gggtgctgcttatcaagaatctggtcgagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| |
|
|
| T |
37360391 |
gggtgctgcttatcaagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgta |
37360490 |
T |
|
| Q |
101 |
aatacaaagttaggagcaggaagagcttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtactggcactactaacttactgt |
200 |
Q |
| |
|
||||||| ||||||||| || | ||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
37360491 |
aatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtactcgcacaactaactaactgt |
37360590 |
T |
|
| Q |
201 |
cacaacatttttatcatatcattgacaacaatcatgatgattttgaatttacaaactatt |
260 |
Q |
| |
|
| ||||||||||||||| | ||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
37360591 |
ctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctacaaagtatt |
37360650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 37367671 - 37367429
Alignment:
| Q |
1 |
gggtgctgcttatcaagaatctggtcgagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| |
|
|
| T |
37367671 |
gggtgctgcttatcaagaatcaggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgta |
37367572 |
T |
|
| Q |
101 |
aatacaaagttaggagcaggaagagcttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtactggcactactaacttactgt |
200 |
Q |
| |
|
||||||| ||||||||| || | ||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
37367571 |
aatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtactcgcacaactaactaactgt |
37367472 |
T |
|
| Q |
201 |
cacaacatttttatcatatcattgacaacaatcatgatgattt |
243 |
Q |
| |
|
| ||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
37367471 |
ctcaacatttttatcatgttattgacaacaatcatgatgattt |
37367429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 313 - 513
Target Start/End: Original strand, 37360675 - 37360876
Alignment:
| Q |
313 |
atatacacagttttgcctatgcttcacagtaatatcgaaagattttatgacttgc-ttgcagtgaaacatgactgtgtgtttggagaggacttggattta |
411 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||| | ||| ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37360675 |
atatacacggttctgcctatgctttgcagtaattttgaatgattttatgacttttgtttcagtgaaacatgactgtgtgtttggcgaggacttggattta |
37360774 |
T |
|
| Q |
412 |
agtgagataacctatgtatctgaggtattctttagtttccactttcttactttcatcactaccacttgtttttgtataaacactcgagatctctatattt |
511 |
Q |
| |
|
| |||||||||||||| |||||||||| |||| |||||||| ||||||||||||||| |||| | || | ||| |||||||||||||||||| |||||| |
|
|
| T |
37360775 |
aatgagataacctatgcatctgaggtaatcttcagtttccagtttcttactttcatctctactattttctcttgaataaacactcgagatctcaatattt |
37360874 |
T |
|
| Q |
512 |
tc |
513 |
Q |
| |
|
|| |
|
|
| T |
37360875 |
tc |
37360876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 313 - 513
Target Start/End: Complemental strand, 37367387 - 37367186
Alignment:
| Q |
313 |
atatacacagttttgcctatgcttcacagtaatatcgaaagattttatgacttgc-ttgcagtgaaacatgactgtgtgtttggagaggacttggattta |
411 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||| | ||| ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37367387 |
atatacacggttctgcctatgctttgcagtaattttgaatgattttatgacttttgtttcagtgaaacatgactgtgtgtttggcgaggacttggattta |
37367288 |
T |
|
| Q |
412 |
agtgagataacctatgtatctgaggtattctttagtttccactttcttactttcatcactaccacttgtttttgtataaacactcgagatctctatattt |
511 |
Q |
| |
|
| |||||||||||||| |||||||||| |||| |||||||| ||||||||||||||| |||| | || | ||| |||||||||||||||||| |||||| |
|
|
| T |
37367287 |
aatgagataacctatgaatctgaggtaatcttcagtttccagtttcttactttcatctctactattttctcttgaataaacactcgagatctcaatattt |
37367188 |
T |
|
| Q |
512 |
tc |
513 |
Q |
| |
|
|| |
|
|
| T |
37367187 |
tc |
37367186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 37386437 - 37386342
Alignment:
| Q |
86 |
ggtttcatgagtgtaaatacaaagttaggagcaggaagagcttttttgagatctctttatgcacagtatgctgctt-ggggtgttgatcttggtac |
180 |
Q |
| |
|
||||||||||| |||||| ||| |||||| ||||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
37386437 |
ggtttcatgagagtaaatgcaacgttaggtgcagggagagcttttttgagatccctttatgagcagtatgctgcttgggggtgttgatcttggtac |
37386342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 37386564 - 37386636
Alignment:
| Q |
356 |
tttatgacttgcttgcagtgaaacatgactgtgtgtttgg---agaggacttggatttaagtgagataaccta |
425 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||||||| || |||||||||| || |||||||||||| |
|
|
| T |
37386564 |
tttatgcctttcttgcagtgaaacatgactgcgtgtttggtaccgatgacttggattaaaatgagataaccta |
37386636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 249 - 460
Target Start/End: Complemental strand, 41229755 - 41229539
Alignment:
| Q |
249 |
ttacaaactattgattgattatacattcatgtattaatttggaattgcattatcatgtacaagaatata----cacagttttgcctatgcttcac-agta |
343 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||| ||||||| |||||||||| | || |
|
|
| T |
41229755 |
ttacaaagtattgattgattatacattcatgtgttaatttggacttgcattatcatgtaggagagtatatgtacacagttaagcctatgctttggtacta |
41229656 |
T |
|
| Q |
344 |
atatcgaaagattttatgacttgcttgcagtgaaacatgactgtgtgtttggagaggacttggatttaagtgagataacctatgtatctgaggtattctt |
443 |
Q |
| |
|
|||| || |||||||||| ||| |||||||||||||| ||||| |||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41229655 |
atattgatagattttatgcctttcttgcagtgaaacacgactgcgtgtttggcgagaacttcgatttaaacgagataacctatgtatctgaggtattctt |
41229556 |
T |
|
| Q |
444 |
tagtttccactttctta |
460 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
41229555 |
cagtttcctctttctta |
41229539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 41230028 - 41229855
Alignment:
| Q |
7 |
tgcttatcaagaatctggtcgagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgtaaataca |
106 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||||||||||| | |||| ||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
41230028 |
tgcttatcaagaatctggtcgtgtgtggcatgcaaaagacatagcaatcccaaaaagagcttgtggatggatgcagaatggtttcatgagtgtagataca |
41229929 |
T |
|
| Q |
107 |
aagttaggagcaggaagagcttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtac |
180 |
Q |
| |
|
| ||||| ||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41229928 |
acattaggggcagggagagcgtttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
41229855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 39243756 - 39243922
Alignment:
| Q |
15 |
aagaatctggtcgagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgtaaatacaaagttagg |
114 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||| |||| |||||| ||||| |||||| || |||||||||||||||||||||| | ||| || |
|
|
| T |
39243756 |
aagaatctggccgattgtggtatgcaaaagacatagggatccctgaaagggcttgtggctggatgactcatggtttcatgagtgtaaatactacgttggg |
39243855 |
T |
|
| Q |
115 |
agcaggaagagcttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtact |
181 |
Q |
| |
|
|| || | ||| |||||||| || ||||||| |||||||||| |||||||||||| |||||||| |
|
|
| T |
39243856 |
tgctggcaaagcctttttgaggtccctttatgtgcagtatgctgaatggggtgttgattttggtact |
39243922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 439
Target Start/End: Original strand, 39244445 - 39244517
Alignment:
| Q |
367 |
cttgcagtgaaacatgactgtgtgtttggagaggacttggatttaagtgagataacctatgtatctgaggtat |
439 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| ||||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
39244445 |
cttgcagtgaaacatgactgtgtatttggcgatgacttagatttaaatgaaataagctatgtatcagaggtat |
39244517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University