View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12935_high_20 (Length: 256)
Name: NF12935_high_20
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_high_20 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 18589069 - 18588822
Alignment:
| Q |
9 |
agcagagattgctgttgattttcctgacaaaaaagttacaatagtgcataaaggatcaagattgctagaatatattggaccaaaagcttcaagaaagaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18589069 |
agcagagattgctgttgattttcctgacaaaaaagttacaatagtgcataaaggatcaagattgctagaatatattggaccaaaagcttcaagaaagaca |
18588970 |
T |
|
| Q |
109 |
ttaaaatggcttaaatcaaggaaagttgatgtaaaattcgaacaatcagttgacttagattccttcacaaatgaaaataggacatatcaaacttcagttg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18588969 |
ttaaaatggcttaaatcaaggaaagttgatgtaaaactcgaacaatcagttgacttagattccttcacaaatgaaaataggacatatcaaacttcagttg |
18588870 |
T |
|
| Q |
209 |
gagagagtatagaagcagatacacattttctatgtatagggaaaccac |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18588869 |
gagagagtatagaagcagatacacattttctatgtatagggaaaccac |
18588822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University