View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12935_high_24 (Length: 236)
Name: NF12935_high_24
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 31205115 - 31204897
Alignment:
| Q |
7 |
ggactcgatggatcaatcgttggggcaccctgatcattggatgctgaagcgttgttgcaaggagccatggatctcactgtctctaaaaccatatgagaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31205115 |
ggactcgatggatcaatcgttggggcaccctgatcattggatgctgaagcgttgttgcaaggagccatggatctcactgtctctaaaaccatatgagaat |
31205016 |
T |
|
| Q |
107 |
aaataaaagatgaaaaggaataaccaattaggtttccaatgattgaattgaattatttctcaatatcaaagtagtacaatgaaatg----gcttatatat |
202 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31205015 |
aaataaaagatgaaaagaaataaccaattaggtttccaatgattaaattgaattatttctcaatatcaaagtagtacaatgaaatggcttgcttatatat |
31204916 |
T |
|
| Q |
203 |
ttgttactagcctttattt |
221 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31204915 |
ttgttactagcctttattt |
31204897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 18436233 - 18436431
Alignment:
| Q |
1 |
taatagggactcgatggatcaatcgttggggcaccctgatcattggatgctgaagcgttgttgcaaggagccatggatctcactg-tctctaaaaccata |
99 |
Q |
| |
|
||||| ||||| ||||||||||| | ||| |||||||| ||||| |||| |||||| ||||||| ||| ||||||||||| || | ||| | | |||||| |
|
|
| T |
18436233 |
taataaggacttgatggatcaattgctggagcaccctgctcattagatgttgaagcattgttgcgaggtgccatggatcttacggctctatgataccata |
18436332 |
T |
|
| Q |
100 |
tgagaataaataaaagatg-aaaaggaataaccaattaggtttccaatgattgaattgaattatttctcaatatcaaagtagtacaatgaaatggcttat |
198 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| ||| |
|
|
| T |
18436333 |
tgagaataagtaaaagatgaaaaagggataaccaattaggtttccaat-----aattgaattatttctcaatgtcaactcagtataatgaaaaggcatat |
18436427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 18431736 - 18431836
Alignment:
| Q |
98 |
tatgagaataaataaaagatgaaaa-ggaataaccaattaggtttccaatgattgaattgaattatttctcaatatcaaagtagtacaatgaaatggctt |
196 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| | |
|
|
| T |
18431736 |
tatgagaataagtaaaagatgaaaaagggataaccaattaggtttccaat-----aattgaattatttctcaatgtcaactcagtataatgaaaaggcat |
18431830 |
T |
|
| Q |
197 |
atatat |
202 |
Q |
| |
|
|||||| |
|
|
| T |
18431831 |
atatat |
18431836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 30151775 - 30151677
Alignment:
| Q |
59 |
tgttgcaaggagccatggatctcactg-tctctaaaaccatatgagaataaataaaagatgaaaa-ggaataaccaattaggtttccaatgattgaatt |
155 |
Q |
| |
|
|||||| ||| |||||||||||||| | ||| | | ||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
30151775 |
tgttgcgaggtgccatggatctcacggctctatgataccatatgagaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaatt |
30151677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University