View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_low_10 (Length: 397)
Name: NF12935_low_10
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 34970283 - 34970631
Alignment:
| Q |
8 |
atcagagaagtttccatggcttgcctccatccatgttgaattttttaagccttccaaacaacataataagtatgagaatgatcttaccctcatcactcca |
107 |
Q |
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| T |
34970283 |
atcagagaagtttccatggcttgcctccatccatgttgaattttttaagccttccaaacaacataataagtatgagaatgatcttaccctcatcactcca |
34970382 |
T |
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| Q |
108 |
ttttccaacaaatccaatccatttgttttcacaatttatctctggatgtaattgtcgttcacaactgtatcccatagtaaatcctacgtttccatatgca |
207 |
Q |
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| T |
34970383 |
tttcccaacaaatccaatccatttgttttcacaatttatctctagatgtaattgtcgttcacaactgtatcccatagtaaatcctacgtttccatacgca |
34970482 |
T |
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| Q |
208 |
ctgtttaccatacacatgcatatgtg-------ttaatatacaaaattaacaacttgagcataacccacataaataatgaataatgaaatcttgttgaaa |
300 |
Q |
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| T |
34970483 |
ctgtttaccatacacatgcatatgtgttaatacttaatatacaaaattaacaacttgagcctaacccacataaataatgaataatgaaatcttgttgaaa |
34970582 |
T |
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| Q |
301 |
ttaattgagtttatccaaac----taaaatttgttattaaatgttagtg |
345 |
Q |
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| T |
34970583 |
ttaattgagtttatccaaactaattaaaatttgttattaaatgttagtg |
34970631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 34952434 - 34952647
Alignment:
| Q |
14 |
gaagtttccatggcttgcctccatccatgttgaattttttaagccttccaaacaacataataagtatgagaatgatcttaccctcatcactccattttcc |
113 |
Q |
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| T |
34952434 |
gaagcttccatgctttgcctccatccatattgaattttttaagccttccaaacaacataacaaatatgagaatgatcttaccctcatcactccattttcc |
34952533 |
T |
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| Q |
114 |
aacaaatccaatccatttgttttcacaatttatctctggatgtaattgtcgttcacaactgtatcccatagtaaatcctacgtttccatatgcactgttt |
213 |
Q |
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| T |
34952534 |
aacaaatccaatccatttgttttcacaatttgtctctggatgcaactgtagttcacaactgtatcctgttgaaaatcctacgttcccatatgcacttttt |
34952633 |
T |
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| Q |
214 |
accatacacatgca |
227 |
Q |
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| T |
34952634 |
accacacacatgca |
34952647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 35029580 - 35029783
Alignment:
| Q |
8 |
atcagagaagtttccatggcttgcctccatccatgttgaattttttaagccttccaaacaacataataagtatgagaatgatcttaccctcatcactcca |
107 |
Q |
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| T |
35029580 |
atcagagaagtttccatggattacccgcatccgtgttgaatttcttgagtcttccaagcaacataacaagtataagaatgatcttaccctcatcactcca |
35029679 |
T |
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| Q |
108 |
ttttccaacaaatccaatccatttgttttcacaatttatctctggatgtaattgtcgttcacaactgtatcccatagtaaatcctacgtttccatatgca |
207 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||| |||| || |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35029680 |
ttttccaacaaatccaatccacttgttttcacaatttgcctctcgatgcaactgtcgttcacaactgtatcccatagtaaatcctacgttctgatatgca |
35029779 |
T |
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| Q |
208 |
ctgt |
211 |
Q |
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|||| |
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| T |
35029780 |
ctgt |
35029783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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