View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_low_13 (Length: 354)
Name: NF12935_low_13
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 34312931 - 34313251
Alignment:
| Q |
17 |
agagcatattaagacatgtgtcgaagacttttaatttatggttgttatttatggttacttattaattatgtatatatagaagttttgaataggaaaaata |
116 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34312931 |
agagcatattaagacatatgtcgaagacttttaatttatggttgttatttacggttacttattaattatctatatatagaagttttgaataggaaaaata |
34313030 |
T |
|
| Q |
117 |
actgtcacaaattataatattgtaatctttacgctcaaagtatctaagttacgagtgcatatcttctagtgaaacttttaatgaagaaagtgatatgaac |
216 |
Q |
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| T |
34313031 |
agggtcacaaattagaatactgtaatctttaagctcaaagtatctaagttacgagtgcatatcttctagtgaaacttttaatggagaaagtgatatgaac |
34313130 |
T |
|
| Q |
217 |
attaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagagaat |
316 |
Q |
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|||| ||||||||||||| ||||| ||||| || ||| |||||||| |||||||||||||||||||||||| |||||||||| |||||| | ||||||| |
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| T |
34313131 |
attagtaccattcaattagttcaacgttga-ggccctgcatggagtgatggaaaataaatgacttagattttattggactcttcaattatagaagagaat |
34313229 |
T |
|
| Q |
317 |
cttctctcctaaattacattga |
338 |
Q |
| |
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|| ||| |||| ||||||||| |
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| T |
34313230 |
ctgctccactaagttacattga |
34313251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 34605426 - 34605507
Alignment:
| Q |
215 |
acattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggact |
296 |
Q |
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| T |
34605426 |
acatcaatactattcaattacttcaatattgaagattctgtatggagtagtgaaaaataagtgacttagatctcattggact |
34605507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 31228438 - 31228543
Alignment:
| Q |
215 |
acattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagaga |
314 |
Q |
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|||| ||||||||||||||||||||| |||||||| | |||||||||| | ||||||||||| ||||||| | | ||||||||||||| |||||||||| |
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| T |
31228438 |
acatcaataccattcaattacttcaacgttgagggctccacatggagtagtagaaaataaatggcttagatctcactggactctccaatcacaagagaga |
31228537 |
T |
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| Q |
315 |
atcttc |
320 |
Q |
| |
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|||||| |
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| T |
31228538 |
atcttc |
31228543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 23862093 - 23861998
Alignment:
| Q |
221 |
ataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagagaatc |
317 |
Q |
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||||||||||||||||||||| |||| || || |||||||||| | ||||||||||| ||||||| | |||||||||||| || ||| ||||||||| |
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| T |
23862093 |
ataccattcaattacttcaatattgaaggccc-acatggagtagtagaaaataaatggcttagatctcattggactctccgatcacaggagagaatc |
23861998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 8533884 - 8533778
Alignment:
| Q |
212 |
tgaacattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagag |
311 |
Q |
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|
||||||||||||||||||||||||||||||||||| || | || |||||| ||||||||||||| ||||||| | |||| |||||| | ||||| ||| |
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| T |
8533884 |
tgaacattaataccattcaattacttcaatgttgaaggctccgcacggagtagtggaaaataaatggcttagatctcattgaactctcaagttacatgag |
8533785 |
T |
|
| Q |
312 |
agaatct |
318 |
Q |
| |
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||||||| |
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|
| T |
8533784 |
agaatct |
8533778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 34639669 - 34639606
Alignment:
| Q |
220 |
aataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttag |
283 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||||||||||||| || |||||||||| ||||| |
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|
| T |
34639669 |
aataccattcaattacatcaatgttgtgggccctacatggagtagtgaaaaataaatggcttag |
34639606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 326
Target Start/End: Original strand, 16443009 - 16443120
Alignment:
| Q |
215 |
acattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagaga |
314 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||| || ||||| |||| ||||||||||||| |||||| | | |||||||||| | ||| |||||| |
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| T |
16443009 |
acatcaatatcattcaattgcttcaatgttgaggatctcacatgaagtagtggaaaataaatggtttagatatcaccggactctccagtcacatgagaga |
16443108 |
T |
|
| Q |
315 |
atcttctctcct |
326 |
Q |
| |
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|| | ||||||| |
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| T |
16443109 |
atttgctctcct |
16443120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 7256763 - 7256842
Alignment:
| Q |
221 |
ataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||| | | |||||||||| |
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| T |
7256763 |
ataccattcaattacttcaatgttgagggcatcccatgaagtagtggaaaataaatggcttagatctcactggactctcc |
7256842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 17177506 - 17177462
Alignment:
| Q |
272 |
taaatgacttagatttaattggactctccaattacaagagagaat |
316 |
Q |
| |
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|||||||||||||||| ||||||||||||| | ||| |||||||| |
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| T |
17177506 |
taaatgacttagatttcattggactctccagtcacaggagagaat |
17177462 |
T |
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