View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_low_15 (Length: 343)
Name: NF12935_low_15
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 37382218 - 37382546
Alignment:
| Q |
18 |
ggttcctgatccaggaaggtggccttcttccaaaggtgggaatggattcagtgaagtagctaagaaagtacatagcttaggtttgaaatttggaattcat |
117 |
Q |
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| T |
37382218 |
ggttcctgatccaggaaggtggccttcttccaaaggtgggaatggattcagtgaagtagctaagaaagtacatagcttaggtttgaaatttggaattcat |
37382317 |
T |
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| Q |
118 |
gttatgagagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacggtattattttgattctctgctataactttatcttcaattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37382318 |
gttatgagagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacggtattattttgattctctgctataactttatcttcaattt |
37382417 |
T |
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| Q |
218 |
aattctgtattataaattcacatgtatgtaagtggataaactc---------------aaataagccaattcaaagagacacgtaacctaaaacaaaagt |
302 |
Q |
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| T |
37382418 |
aattctgtattataaattcacatgtatgtaagtggataaactcaaataagcgaattcaaaataagccaattcaaagagacacgtaacctaaaacaaaagt |
37382517 |
T |
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| Q |
303 |
tcttattgaccttttcacgtgatttccta |
331 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
37382518 |
tcttattgaccttttcacgtgatttccta |
37382546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 22 - 268
Target Start/End: Original strand, 37374880 - 37375133
Alignment:
| Q |
22 |
cctgatccaggaaggtggccttcttccaaaggtgggaatggattcagtgaagtagctaagaaagtacatagcttaggtttgaaatttggaattcatgtta |
121 |
Q |
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| T |
37374880 |
cctgatccagtcaggtggccttcttccaatggtggaaatggattcagtgaagtagctaagaaagtgcatagcttaggtttaaagtttggaattcatatta |
37374979 |
T |
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| Q |
122 |
tgagagggattagcacacaagctgtgaatgcaaacacccctatcctagata---caacggtattattttgattctctgctataactttatcttc----aa |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || | |
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| T |
37374980 |
tggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagcaacggtattattttgattttctgctataactttatcatctatata |
37375079 |
T |
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| Q |
215 |
tttaattctgtattataaattcacatgtatgtaagtggataaactcaaataagc |
268 |
Q |
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|||| || ||||||||||||||||| |||||| ||| ||| ||||||||||||| |
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| T |
37375080 |
tttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagc |
37375133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 37360058 - 37360318
Alignment:
| Q |
22 |
cctgatccaggaaggtggccttcttccaaaggtgggaatggattcagtgaagtagctaagaaagtacatagcttaggtttgaaatttggaattcatgtta |
121 |
Q |
| |
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|||||||||| |||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
37360058 |
cctgatccagtaaggtggccttcatccaaaagtgggaatggattcaccgaaatagctaagaaagtacatagcttaggtttgaagtttggaattcatatta |
37360157 |
T |
|
| Q |
122 |
tgagagggattagcacacaagctgtgaatgcaaacacccctatcctagat---acaacggtattattttgattctctgctataactttatcttc--aatt |
216 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |
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| T |
37360158 |
tggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtattattttgattttctgctataactttatcttctatata |
37360257 |
T |
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| Q |
217 |
taattctgtattataaattcacatgtatgtaagtggataaactcaaataagccaattcaaa |
277 |
Q |
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|| || || |||||| ||||||| |||| | ||| ||||||||| ||||||| | |||||| |
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| T |
37360258 |
tatttatgcattatacattcacaagtatatcagtagataaactcgaataagcaatttcaaa |
37360318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 37368006 - 37367813
Alignment:
| Q |
22 |
cctgatccaggaaggtggccttcttccaaaggtgggaatggattcagtgaagtagctaagaaagtacatagcttaggtttgaaatttggaattcatgtta |
121 |
Q |
| |
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|||||||||| |||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
37368006 |
cctgatccagtaaggtggccttcatccaaaagtgggaatggattcacagaaatagctaagaaagtacatagcttaggtttgaagtttggaattcatatta |
37367907 |
T |
|
| Q |
122 |
tgagagggattagcacacaagctgtgaatgcaaacacccctatcctagata---caacggtattattttgattctctgctataactttatcttc |
212 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
37367906 |
tggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtattattttgattttctgctataactttatcttc |
37367813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 37375166 - 37375194
Alignment:
| Q |
290 |
ctaaaacaaaagttcttattgaccttttc |
318 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
37375166 |
ctaaaacaaaagttcttattgaccttttc |
37375194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 41230386 - 41230234
Alignment:
| Q |
22 |
cctgatccaggaaggtggccttcttccaaaggtgggaatggattcagtgaagtagctaagaaagtacatagcttaggtttgaaatttggaattcatgtta |
121 |
Q |
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||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |
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| T |
41230386 |
cctgatccaggaaggtggccttcttcccatggtgggaatgggttaagtgaagtagctaagaaagtacatagcttaggtttaaagtttggaattcatatta |
41230287 |
T |
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| Q |
122 |
tgagagggattagcacacaagctgtgaatgcaaacacccctatcctagataca |
174 |
Q |
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|||||||||| ||||||||||||||| ||||||| |||||||| ||||||||| |
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| T |
41230286 |
tgagagggataagcacacaagctgtggatgcaaatacccctattctagataca |
41230234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 39243382 - 39243538
Alignment:
| Q |
20 |
ttcctgatccaggaaggtggccttcttccaaaggtgggaatggattcagtgaagtagctaagaaagtacatagcttaggtttgaaatttggaattcatgt |
119 |
Q |
| |
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||||||| |||| ||||||||||||||| ||| |||||| || ||||| ||||||||||| ||| |||| | | ||||| || ||||| |||||||| |
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| T |
39243382 |
ttcctgacccagaaaggtggccttcttcacaagatgggaaagggttcagcgaagtagctaatcgagtgcataacatgggtttaaagtttgggattcatgt |
39243481 |
T |
|
| Q |
120 |
tatgagagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaac |
176 |
Q |
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|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
39243482 |
tatgagagggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaac |
39243538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 280
Target Start/End: Original strand, 50998668 - 50998696
Alignment:
| Q |
252 |
gataaactcaaataagccaattcaaagag |
280 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
50998668 |
gataaactcaaataagccaattcaaagag |
50998696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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