View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_low_16 (Length: 304)
Name: NF12935_low_16
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 18588214 - 18588491
Alignment:
| Q |
18 |
atatatttcaattttcaaatcaaacaatgttgcattaactacgacggtttgtgtgaaaatagcaaactaacaaatagtgaaagatatcgatcatgttatg |
117 |
Q |
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| T |
18588214 |
atatatttcaattttcaaatcaaacaatgttgcattaactatgatggtttgtgtgaaaatagcaaactaataaatactgaaagatatcgatcatgttatg |
18588313 |
T |
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| Q |
118 |
ttccgactatataaaccaggtctaatgcaacaacttgattacnnnnnnnctacttggctatgtgaagtcctaagtttgagcaccgggagtaactgttatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
18588314 |
ttccgactatataaaccaggtctaatgcaacaacttgattac-aaaaaactacttggctatgtgaagtcctaagtttgagcagcgagagtaactgttatt |
18588412 |
T |
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| Q |
218 |
ttccggtatctgggattgacaatagctgactggtcaatctcagatagcggaaaatatcagtttttcaaattctcctatg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18588413 |
ttccggtatctgggattgacaatagctgactggtcaatctcagatagcggaaaatatcagtttttcaaattctcctatg |
18588491 |
T |
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