View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_low_18 (Length: 301)
Name: NF12935_low_18
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_low_18 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 7971582 - 7971306
Alignment:
| Q |
16 |
atatcgacatctttttattctctatattactttttaggctcaaatttgtattctggatttcattttattttcatcactctttataagtaacttgtggatt |
115 |
Q |
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| T |
7971582 |
atatcgacatctttttattctctatattactttttaggctcaaatttgtattttggatttcattttattttcatcactctttataagtaacttgtggaat |
7971483 |
T |
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| Q |
116 |
gaaacaagctaatttaaatcttttatgtttgtgtttcagttactctacaattgcttgggctggtagtatgcacaagggagtactagaaaatgtacaatat |
215 |
Q |
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| T |
7971482 |
gaaacaagctaatttaaatcttttatgtttgtgtttcagttactctacaattgcttgggctggtagtatacacaagggagtactagaaaatgtacaatat |
7971383 |
T |
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| Q |
216 |
agtagcaaagctacaactactgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgc |
292 |
Q |
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| T |
7971382 |
agtagcaaagctacaactactgcaggatctgtctttaatttctttaatgcacttggctctgttgcatttgcctttgc |
7971306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 75 - 293
Target Start/End: Original strand, 8042188 - 8042408
Alignment:
| Q |
75 |
tcattttattttcatcactctttataagtaacttgtggatt--gaaacaagctaatttaaatcttttatgtttgtgtttcagttactctacaattgcttg |
172 |
Q |
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| T |
8042188 |
tcattttattttcaccactcattatatccaacttgtggaatatgaaacaagctaatttaaatcttttatgtttgtgtttcagttactctacaattgcttg |
8042287 |
T |
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| Q |
173 |
ggctggtagtatgcacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtctttgatttctttaatgcactcggc |
272 |
Q |
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| T |
8042288 |
ggctggtagtatacacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtcttttatttctttaatgcacttggc |
8042387 |
T |
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| Q |
273 |
gctgttgcatttgcctttgct |
293 |
Q |
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| T |
8042388 |
tctgttgcatttgcctttgct |
8042408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 152 - 293
Target Start/End: Original strand, 8032363 - 8032504
Alignment:
| Q |
152 |
cagttactctacaattgcttgggctggtagtatgcacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtcttt |
251 |
Q |
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| T |
8032363 |
cagttattctacaattgcttggactactagtgtacacaagggagtacaagaaaatgtacaatatagtagcaaggctacaaatactgcagaatcagtcttt |
8032462 |
T |
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| Q |
252 |
gatttctttaatgcactcggcgctgttgcatttgcctttgct |
293 |
Q |
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| T |
8032463 |
aatttctttaatgcactcggctctgttgcatttgcctatgct |
8032504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 8042106 - 8042164
Alignment:
| Q |
16 |
atatcgacatctttttattctctatattactttttaggctcaaatttgtattctggatt |
74 |
Q |
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| T |
8042106 |
atatcgacatctttttattctctatattactttttaggctcaaatttgtattttggatt |
8042164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 8032227 - 8032284
Alignment:
| Q |
16 |
atatcgacatctttttattctctatattactttttaggctcaaatttgtattctggatt |
74 |
Q |
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| T |
8032227 |
atatcgacatctttctattctctatattac-ttttaggctcaaatatgtattttggatt |
8032284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 41381888 - 41381747
Alignment:
| Q |
147 |
tgtttcagttactctacaattgcttgggctggtagtatgcacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctg |
246 |
Q |
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||||||||||||||| |||||||||||| ||||||| | ||||||||||||| || |||||||||||||| ||||||||| || |||| ||||||||||| |
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| T |
41381888 |
tgtttcagttactctgcaattgcttgggttggtagtgtacacaagggagtacaagcaaatgtacaatatactagcaaagccacgactagtgcaggatctg |
41381789 |
T |
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| Q |
247 |
tctttgatttctttaatgcactcggcgctgttgcatttgcct |
288 |
Q |
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| T |
41381788 |
tctttaatttctttaatgcacttggttctgttgcttttgcct |
41381747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 268
Target Start/End: Complemental strand, 2744 - 2628
Alignment:
| Q |
152 |
cagttactctacaattgcttgggctggtagtatgcacaagggagtactagaaaatgtacaatatagtagcaaagctacaactactgcaggatctgtcttt |
251 |
Q |
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|||||||||||| ||||||||| ||| || |||||||||||| |||||||||||||||||||||| || ||||| || | |||| ||| |||||| |
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| T |
2744 |
cagttactctactattgcttggactgccggtgcacacaagggagtaatagaaaatgtacaatatagtagaaacgctacgacggccgcagaatcagtcttt |
2645 |
T |
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| Q |
252 |
gatttctttaatgcact |
268 |
Q |
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| T |
2644 |
aatttctttaatgcact |
2628 |
T |
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