View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12935_low_19 (Length: 294)

Name: NF12935_low_19
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12935_low_19
NF12935_low_19
[»] chr7 (1 HSPs)
chr7 (9-294)||(449934-450211)
[»] chr3 (13 HSPs)
chr3 (34-201)||(9329877-9330041)
chr3 (48-188)||(9395314-9395454)
chr3 (34-124)||(9336581-9336671)
chr3 (47-110)||(9695615-9695678)
chr3 (34-109)||(41980895-41980970)
chr3 (34-109)||(41985669-41985744)
chr3 (63-111)||(9756450-9756498)
chr3 (70-109)||(9485969-9486008)
chr3 (70-109)||(13864281-13864320)
chr3 (34-109)||(9343886-9343961)
chr3 (63-109)||(9686753-9686799)
chr3 (52-117)||(16011695-16011760)
chr3 (62-110)||(9613916-9613964)
[»] chr6 (7 HSPs)
chr6 (34-117)||(7025797-7025880)
chr6 (34-110)||(7012861-7012937)
chr6 (34-118)||(7041537-7041621)
chr6 (34-117)||(7029854-7029937)
chr6 (34-109)||(7046880-7046955)
chr6 (34-118)||(9170858-9170942)
chr6 (34-118)||(9159486-9159570)
[»] chr5 (1 HSPs)
chr5 (45-112)||(18571163-18571230)
[»] chr8 (1 HSPs)
chr8 (52-109)||(13170684-13170741)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 450211 - 449934
Alignment:
Q  9 agcagagaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatca 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  450211 agcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatca 450112  T
Q  109 atccatacagtaacacggtcaccgtttgtatagcaaatcactagcaacaactggaactcactactcgccaccaagaattttcttctcccaccataccacg 208  Q
    |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450111 atccatacagt--------caccgtttgtatagcaaatcactagcaacaactggaactcactactcgccaccaagaattttcttctcccaccataccacg 450020  T
Q  209 ggtcagcctgagccatcaaatgaatgctcatgtctggtccaatcatcacagtccgattggtactgtctaccacacacggccttcct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  450019 ggtcagcctgagccatcaaatgaatgctcatgtctggtccaatcatcacagtctgattggtactgtctaccacacaaggccttcct 449934  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 9329877 - 9330041
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacacggtcaccgt 133  Q
    ||||||||||   ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| | |   |    
T  9329877 aagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacacgataa---t 9329973  T
Q  134 ttgtatagcaaatcactagcaacaactggaactcactactcgccaccaagaattttcttctcccacca 201  Q
    ||  ||| | |  ||| ||||||||||  |||||||||||| | ||||||||||| ||| ||||||||    
T  9329974 tttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaatttacttttcccacca 9330041  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 9395314 - 9395454
Alignment:
Q  48 atctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacacggtcaccgtttgtatagcaaatc 147  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||| | ||| ||||   |  |    
T  9395314 atctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttacaataacacgatcatcatttttatatatatcc 9395413  T
Q  148 actagcaacaactggaactcactactcgccaccaagaattt 188  Q
    |||||||||||||| || |||||| || | |||||||||||    
T  9395414 actagcaacaactgaaagtcactagtctcgaccaagaattt 9395454  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 9336581 - 9336671
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacac 124  Q
    ||||||||||   |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  9336581 aagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacac 9336671  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 9695678 - 9695615
Alignment:
Q  47 tatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 110  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  9695678 tatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaat 9695615  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 41980895 - 41980970
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 109  Q
    |||||||||| | |||| |||||| |||||||||||||||| || ||||| |||| | ||||||||||||||||||    
T  41980895 aagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaa 41980970  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 41985669 - 41985744
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 109  Q
    |||||||||| | |||| |||||| ||| |||||||||||| || ||||||||||||||||| || ||||||||||    
T  41985669 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 41985744  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 9756450 - 9756498
Alignment:
Q  63 caacttgacccactttttctccttctcatcaagcctaaacacatcaatc 111  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  9756450 caacttgacccaccttttctctttctcatcaagcctatacacatcaatc 9756498  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 9486008 - 9485969
Alignment:
Q  70 acccactttttctccttctcatcaagcctaaacacatcaa 109  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  9486008 acccacttcttctccttctcatcaagcctaaacacatcaa 9485969  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 13864281 - 13864320
Alignment:
Q  70 acccactttttctccttctcatcaagcctaaacacatcaa 109  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13864281 acccactttttctccctctcatcaagcctaaacacatcaa 13864320  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 9343886 - 9343961
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 109  Q
    ||||||||||   |||| |||||| | || ||||| |||||||| |||||| ||||||||||| ||||||||||||    
T  9343886 aagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 9686753 - 9686799
Alignment:
Q  63 caacttgacccactttttctccttctcatcaagcctaaacacatcaa 109  Q
    ||||||||||||||| ||||| |||||||||||||| || |||||||    
T  9686753 caacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 16011760 - 16011695
Alignment:
Q  52 cctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 117  Q
    |||||||| | ||| || ||||| || |||||||||||||| |||| |||||||||||||| ||||    
T  16011760 cctaaattaggcaatttaacccaattcttctccttctcatcgagcccaaacacatcaatccttaca 16011695  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 9613964 - 9613916
Alignment:
Q  62 tcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 110  Q
    ||||||| |||||||| |||||||||||||||||| |||| | ||||||    
T  9613964 tcaacttcacccacttcttctccttctcatcaagcttaaaaaaatcaat 9613916  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 7025797 - 7025880
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 117  Q
    ||||||||||   ||||||||||| |||||||||| |||||||| ||||||||||||| |||| |||||| |||||||| ||||    
T  7025797 aagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 7012861 - 7012937
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 110  Q
    |||||||||||  ||||||||||| | |||||||| |||||||| ||||||||||||| |||| |||||| ||||||    
T  7012861 aagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaat 7012937  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 7041537 - 7041621
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 118  Q
    ||||||||||   |||| |||||| | |||||||| |||||||| ||||||||||||| |||  |||||| ||||||||||||||    
T  7041537 aagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaatccatacag 7041621  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 7029854 - 7029937
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 117  Q
    ||||||||||   |||| || ||| |||||||||| |||||||| ||||||||||||| |||| |||||| |||||||| ||||    
T  7029854 aagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 7046880 - 7046955
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 109  Q
    |||||||||| | |||| |||||| |||| ||||| |||||||| ||||||||||||| |||| |||||| |||||    
T  7046880 aagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcattaagcttaaacaaatcaa 7046955  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 9170858 - 9170942
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 118  Q
    ||||||||||   |||| |||||| |||| || || |||||||| ||||||||||||| |||| |||||| |||||||| |||||    
T  9170858 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacag 9170942  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 9159570 - 9159486
Alignment:
Q  34 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 118  Q
    ||||||||||   |||| |||||| |||| || || |||||||| ||||||||||| | |||| |||||| |||||||| |||||    
T  9159570 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacag 9159486  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 18571163 - 18571230
Alignment:
Q  45 tgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatcc 112  Q
    |||||| |||||| ||||||| || |||||||| |||||||||||||||||| |||| | ||||||||    
T  18571163 tgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaagcttaaagaaatcaatcc 18571230  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 13170741 - 13170684
Alignment:
Q  52 cctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 109  Q
    |||||| ||| |||||||||||| || |||||||| |||||||| || ||||||||||    
T  13170741 cctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaa 13170684  T

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