View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12935_low_20 (Length: 286)

Name: NF12935_low_20
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12935_low_20
NF12935_low_20
[»] chr3 (3 HSPs)
chr3 (24-268)||(50012104-50012348)
chr3 (24-268)||(42066279-42066524)
chr3 (24-268)||(21444110-21444351)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 50012104 - 50012348
Alignment:
Q  24 ataccaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggtaagtgtttt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  50012104 ataccaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacatatgttcttctttctaatgtaacgtgggcaagtgtttt 50012203  T
Q  124 tcaaatattaaagattgannnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatatttttgagcaagttaaatcaaaatgtt 223  Q
     |||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50012204 ccaaatattaaagattgatttttttttcttctttttttaaataaagattgaaattttgagcaacttcaatatatttttgagcaagttaaatcaaaatgtt 50012303  T
Q  224 catccttgtaatatcaacttcatctaattatgtgcattcacttct 268  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  50012304 catccctgtaatatcaacttcatctaattatgtgcattcacttct 50012348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 42066279 - 42066524
Alignment:
Q  24 ataccaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggtaagtgtttt 123  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  42066279 ataccaaatctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggcaaatgtttt 42066378  T
Q  124 tcaaatattaaagattga-nnnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatatttttgagcaagttaaatcaaaatgt 222  Q
     |||||||||||||||||                     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42066379 ccaaatattaaagattgattttttttttcttctttttttaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagttaaatcaaaatgt 42066478  T
Q  223 tcatccttgtaatatcaacttcatctaattatgtgcattcacttct 268  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  42066479 tcatccatgtaatatcaacttcatctaattatgtgcattcacttct 42066524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 21444351 - 21444110
Alignment:
Q  24 ataccaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggtaagtgtttt 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  21444351 ataccaaacctgtttatatttctttttcattcctctctctctaaaagagcttaagaaatacacatgttcttctttctgaagtaacgtgggcaagtgtttt 21444252  T
Q  124 tcaaatattaaagattgannnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatatttttgagcaagttaaatcaaaatgtt 223  Q
     |||||||||||||||||                    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21444251 ccaaatattaaagattga---tttttttttctttttttaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagttaaatcaaaatgtt 21444155  T
Q  224 catccttgtaatatcaacttcatctaattatgtgcattcacttct 268  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||    
T  21444154 catccctgtaatatcaacttcatctaattatctgcattcacttct 21444110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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