View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12935_low_22 (Length: 254)

Name: NF12935_low_22
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12935_low_22
NF12935_low_22
[»] chr3 (3 HSPs)
chr3 (1-104)||(18436134-18436237)
chr3 (104-240)||(18435921-18436060)
chr3 (196-240)||(19474428-19474472)
[»] chr8 (2 HSPs)
chr8 (1-104)||(6933020-6933123)
chr8 (126-240)||(6933212-6933333)
[»] chr7 (2 HSPs)
chr7 (112-240)||(31205146-31205261)
chr7 (61-91)||(31205113-31205143)
[»] chr2 (3 HSPs)
chr2 (1-104)||(30151789-30151892)
chr2 (171-240)||(30152036-30152105)
chr2 (196-240)||(26363237-26363281)


Alignment Details
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 18436237 - 18436134
Alignment:
Q  1 tattatgtccatccaagtgatggtcctacctcaattccaattactcatgtgcttactggttccaattaccatagctgggctcggtctatgcgtagggctt 100  Q
    ||||||||||||||||| ||||||||||||||  || ||||||||| | | ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18436237 tattatgtccatccaagcgatggtcctacctcggtttcaattactcctctacttactggttccaattaccatagttgggctcggtctatgcgtagggctt 18436138  T
Q  101 tggg 104  Q
    ||||    
T  18436137 tggg 18436134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 18436060 - 18435921
Alignment:
Q  104 gcttggaagcgttgcaatatgcatgctcgtgcattcatggatcatgaattatgttgctgaatcgatc-------ccattgtatttacagaaaatgcaatt 196  Q
    ||||||| ||||||||||||||    |||| || |||||||||||||||| ||| |||||||| ||        ||||||||||||  ||||||||  |     
T  18436060 gcttggacgcgttgcaatatgc----tcgttcactcatggatcatgaattctgtcgctgaatcaattggccaatccattgtatttatggaaaatgcggtc 18435965  T
Q  197 gatgtttggaatgatttgaaagaacacttttctcaaggtgattt 240  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  18435964 gatgtttggaatgatttgaaagaacgcttctctcaaggtgattt 18435921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 19474472 - 19474428
Alignment:
Q  196 tgatgtttggaatgatttgaaagaacacttttctcaaggtgattt 240  Q
    ||||||||||||||||||||| |||| |||||| || ||||||||    
T  19474472 tgatgtttggaatgatttgaatgaacgcttttcacatggtgattt 19474428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 6933020 - 6933123
Alignment:
Q  1 tattatgtccatccaagtgatggtcctacctcaattccaattactcatgtgcttactggttccaattaccatagctgggctcggtctatgcgtagggctt 100  Q
    |||||||| |||||||| |||||||| |||||| || ||||||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||||    
T  6933020 tattatgttcatccaagcgatggtccgacctcagtttcaattactcctgtgcttaccggatccaattaccatagttgggctcggtctatgcgtagggctt 6933119  T
Q  101 tggg 104  Q
    ||||    
T  6933120 tggg 6933123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 6933212 - 6933333
Alignment:
Q  126 atgctcgtgcattcatggatcatgaattatgttgctgaatcgatc-------ccattgtatttacagaaaatgcaattgatgtttggaatgatttgaaag 218  Q
    ||||| |||||||||||||||||||||| |||  ||||||||||        |||||||||||| |||||||||  | |||||||||||||||||||||     
T  6933212 atgcttgtgcattcatggatcatgaattctgtcactgaatcgattggtcaatccattgtatttatagaaaatgcggtagatgtttggaatgatttgaaat 6933311  T
Q  219 aacacttttctcaaggtgattt 240  Q
    ||| |||||||| |||||||||    
T  6933312 aacgcttttctctaggtgattt 6933333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 31205146 - 31205261
Alignment:
Q  112 gcgttgcaatatgcatgctcgtgcattcatggatcatgaattatgttgctgaatcgatcccattgtatttacagaaaatgcaattgatgtttggaatgat 211  Q
    ||||||||||||||||||||| ||||||||||||||||||             ||||||||||||||||||  |||||| || |||||||||||||||||    
T  31205146 gcgttgcaatatgcatgctcgcgcattcatggatcatgaa-------------tcgatcccattgtatttatggaaaatacagttgatgtttggaatgat 31205232  T
Q  212 ttgaaagaacacttttctcaaggtgattt 240  Q
    |||||||||||||||||||||||||||||    
T  31205233 ttgaaagaacacttttctcaaggtgattt 31205261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 91
Target Start/End: Original strand, 31205113 - 31205143
Alignment:
Q  61 tccaattaccatagctgggctcggtctatgc 91  Q
    |||||||||||||||||||||||||||||||    
T  31205113 tccaattaccatagctgggctcggtctatgc 31205143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30151789 - 30151892
Alignment:
Q  1 tattatgtccatccaagtgatggtcctacctcaattccaattactcatgtgcttactggttccaattaccatagctgggctcggtctatgcgtagggctt 100  Q
    ||||||||||||| ||| ||||||||||||||| || |||||||||   | ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  30151789 tattatgtccatctaagcgatggtcctacctcagtttcaattactcccctacttactggttccaattaccatagttgggctcggtctatgcatagggctt 30151888  T
Q  101 tggg 104  Q
    ||||    
T  30151889 tggg 30151892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 30152036 - 30152105
Alignment:
Q  171 ccattgtatttacagaaaatgcaattgatgtttggaatgatttgaaagaacacttttctcaaggtgattt 240  Q
    ||||||||||||  ||||||||  | |||||||||||||||||||||||||  || ||||||||||||||    
T  30152036 ccattgtatttatggaaaatgcggtcgatgtttggaatgatttgaaagaacgtttctctcaaggtgattt 30152105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 26363281 - 26363237
Alignment:
Q  196 tgatgtttggaatgatttgaaagaacacttttctcaaggtgattt 240  Q
    |||||||||||||||| |||| ||||  |||||||||||||||||    
T  26363281 tgatgtttggaatgatctgaaggaacgattttctcaaggtgattt 26363237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University