View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_low_26 (Length: 224)
Name: NF12935_low_26
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_low_26 |
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| [»] scaffold1175 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 14276634 - 14276823
Alignment:
| Q |
19 |
atgtctcacatcatgcacaactttagaaaatactacaatattaaattaaaataaatagcatgtatattcattcatcggtcgcaaacctattatttgttgt |
118 |
Q |
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| T |
14276634 |
atgtctcacatcatgcacaactttagaaaatactacaatattaaattaaaataaatagcatgtatattcattcatcggtcgcaaacctattatttgttgt |
14276733 |
T |
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| Q |
119 |
aatgaggtcgttccacttttcaatctcctcctcatcaagtgattttctgattcctttgagaaagttgaattctctatatgcatttctgtg |
208 |
Q |
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| T |
14276734 |
aatgaggtcgttccacttttcaatctcctcctcatcaagtgattttctgattcctttgagaaagttgaattctctataagcatttttgtg |
14276823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 318 - 126
Alignment:
| Q |
19 |
atgtctcacatcatgcacaactttagaaaatactacaatattaaattaaaataaatagcatgtatattcattcatcggtcgcaaacctattattt---gt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || |
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| T |
318 |
atgtctcacatcatgcacaactttagaaaatactacaatattaaattaaaataaatagcatctatattcattcatcggtcgcaatgcttttatttttagt |
219 |
T |
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| Q |
116 |
tgtaatgaggtcgttccacttttcaatctcctcctcatcaagtgattttctgattcctttgagaaagttgaattctctatatgcatttctgtg |
208 |
Q |
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| T |
218 |
tgtaatgagatcgttccactttacaatctcctcctcattaagtgattttctgattcctttgagaaagttgaattctctatatgcatttctgtg |
126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 35130083 - 35130160
Alignment:
| Q |
119 |
aatgaggtcgttccacttttcaatctcctcctcatcaagtgattttctgattcctttgagaaagttgaattctctatatgc |
199 |
Q |
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| T |
35130083 |
aatgacgttgttccacttttcaatctcctcctcgtcaagt---tttctgattccattgagaaagttgaattctctatatgc |
35130160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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