View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_low_3 (Length: 526)
Name: NF12935_low_3
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 10 - 509
Target Start/End: Original strand, 54849003 - 54849502
Alignment:
| Q |
10 |
accacaattgatctacacctataacaggaatatcaaacacaacgacataaattggtgtcatgtcaggtattttgtaagtatcggagttacatagatcttt |
109 |
Q |
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| T |
54849003 |
accacaataaatctacccctataacaggaatatcaaacacaacgacataaattggtgtcatgtcaggtattttgtaagtgtcggagttacatagatcttt |
54849102 |
T |
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| Q |
110 |
ccacgaccatacaatataatatgaaaagtcaaagttagatagagttgcttacccaaagaaataattcggtaggcccaccaatgagagcaaattgataatc |
209 |
Q |
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| T |
54849103 |
ccacgaccatacaatataacatgaaaagtcaaaggtagatagaggtgcttacccaaagaaataattcggtaggcccaccaatgagagcaaattgataatc |
54849202 |
T |
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| Q |
210 |
ttgatcaaggtacaaaatccagtaatccccaacagcaggaataaatggcaagaatggaggaacaagaaatctgaccttgagtttggcttcatcactattg |
309 |
Q |
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| T |
54849203 |
ttgatcaaggtacaaaatccagtaatccccaacagcaggaataaatggcaagaatggaggaacaagaaatctgaccttgagtttggcttcatcactatta |
54849302 |
T |
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| Q |
310 |
gggtcagccttataagcaatgccatgtatagactctcttttaccattattccaagtctcatttagaacatccacagtgccattactgttgagagtgtatg |
409 |
Q |
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| T |
54849303 |
gggtcagccttataagcaatgccatgtatagactctcttttaccattattccaagtctcatttagaacatccacagtgccattactgttgagaatgtatg |
54849402 |
T |
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| Q |
410 |
tggctctagtgttctctccatttgcgggctgaaaaaatgaagggaaagaagctatttcgtaccatcgacccatgtacctctccaagtctacacctttcac |
509 |
Q |
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| T |
54849403 |
tggctctagtgttctctccatttgtgggctgaaaaaatgaagggaaagaagctatttcgtaccatcgacccatgtacctctccaagtctacacctttcac |
54849502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 130 - 509
Target Start/End: Original strand, 54820350 - 54820731
Alignment:
| Q |
130 |
atgaaaagtcaaagttaga--tagagttgcttacccaaagaaataattcggtaggcccaccaatgagagcaaattgataatcttgatcaaggtacaaaat |
227 |
Q |
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|||||||| |||||||||| ||| ||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||| ||||||||||||||| |
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| T |
54820350 |
atgaaaaggcaaagttagagatagggttgcttacccaaagaaatttattggtaggcccgccaatgagagcatattgataatcttcatcaaggtacaaaat |
54820449 |
T |
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| Q |
228 |
ccagtaatccccaacagcaggaataaatggcaagaatggaggaacaagaaatctgaccttgagtttggcttcatcactattggggtcagccttataagca |
327 |
Q |
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| T |
54820450 |
ccagtaatctccaacagcaggaataattggcaagaatggaggaacatagaatttgaccttgagcttagcttcatcacttttggggtcagccttataagca |
54820549 |
T |
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| Q |
328 |
atgccatgtatagactctcttttaccattattccaagtctcatttagaacatccacagtgccattactgttgagagtgtatgtggctctagtgttctctc |
427 |
Q |
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| T |
54820550 |
cttccttctatagaggttcttttaccattattccaagtctcattgagaacatgaacagtcccatcactgtttagagtgtatgtggctcttgtgttctctc |
54820649 |
T |
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| Q |
428 |
catttgcgggctgaaaaaatgaagggaaagaagctatttcgtaccatcgacccatgtacctctccaagtctacacctttcac |
509 |
Q |
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| T |
54820650 |
catttttgggctgaaagaatgaagggaaagaagctatttcgtaccatcgacccatgtacctctccaagtctacacccttcac |
54820731 |
T |
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