View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_low_4 (Length: 505)
Name: NF12935_low_4
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 30742518 - 30742445
Alignment:
| Q |
270 |
attaagttagctaattgaagatgcatcaaaatgacccaaaagataagcatagttttctgcatacaagggaatgc |
343 |
Q |
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| T |
30742518 |
attaagttagctgattgaagatgcatcaaaatgacccaaaagataagcatagctttttgaatactagtgaatgc |
30742445 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 30742829 - 30742749
Alignment:
| Q |
148 |
attgtttgagttggcagcttattagcatcttta---atcatctcactt-atttggtggtttctttctttcaaaagcatacc |
224 |
Q |
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| T |
30742829 |
attgtttgagttggcagcttaatagcatctttatcgatcatttcacttcatttggtggatgcttttttccaaaagcatacc |
30742749 |
T |
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