View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12935_low_5 (Length: 488)
Name: NF12935_low_5
Description: NF12935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12935_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 16370823 - 16371012
Alignment:
| Q |
17 |
acttaatagtcgttgcaaaagattaggagccctataagactcttctgaatctgattcttttcctagttgcaatggcttagtgagcataannnnnnnctct |
116 |
Q |
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| T |
16370823 |
acttaatagtcgttgcaaaagattaggagccctataagactcttctgaatctgattcttttgctagttgcaatggcttagtgagcataatttttttctct |
16370922 |
T |
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| Q |
117 |
tctttgtttatctgcacaaccaccatttcttttgttaattattttatgaaaaacttaattaccctctaatctcaattagtgtggtatgag |
206 |
Q |
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| T |
16370923 |
tctttgtttatctgcacaaccaccatttcttttgttaattattttatgaaaaacttaattaccctctaatctcaattagtgtggtatgag |
16371012 |
T |
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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 352 - 479
Target Start/End: Original strand, 16371036 - 16371163
Alignment:
| Q |
352 |
taaaaagaatatatgaaaatgttgcatgctatcacataaaattgttatatttttctaaaatgnnnnnnnnnnnnnnnntcttaacattctcctgtaacag |
451 |
Q |
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| T |
16371036 |
taaaatgaatatatgaaaatgttgcatgctatcacataaaattgttatatttttctaaaatgaaaaaaaaataaaaaatcctaacattctcctgtaacag |
16371135 |
T |
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| Q |
452 |
gaagtgtttttcttttaaaatgatgatg |
479 |
Q |
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| T |
16371136 |
gaagtgtttttcttttaaaatgatgatg |
16371163 |
T |
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