View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_high_19 (Length: 246)
Name: NF12936_high_19
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 776772 - 777000
Alignment:
| Q |
1 |
tttattgtatgcacttaatttcacaactttgcaagaaccgatcaatttattgcattttcctgcaagtccttcaactggagtatacttgtagatcttgaat |
100 |
Q |
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| T |
776772 |
tttattgtatgcacttaatttcacaactttgcaagaaccgatcaatttattgcattttcctgcaagtccttcaactggagtatacttgtagatcttgaat |
776871 |
T |
|
| Q |
101 |
caaataagaacgtattttattgcatcttgaacatatgttatctacaatcaagnnnnnnncacaagttagtaactaaagtttatatcataagctaatatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
776872 |
caaataagaacgtattttattgcatcttgaacatattttatctacaatcaagtttttttcacaagttagtaactaaagtttatatcataagctaatatta |
776971 |
T |
|
| Q |
201 |
tgagatagaaggtaattaaaactagtctt |
229 |
Q |
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||||||||||| ||||||||| ||||||| |
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| T |
776972 |
tgagatagaagataattaaaattagtctt |
777000 |
T |
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