View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_high_5 (Length: 369)
Name: NF12936_high_5
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 30292248 - 30292581
Alignment:
| Q |
11 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292248 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaa |
30292347 |
T |
|
| Q |
111 |
ctttttaatgcttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccac |
210 |
Q |
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| T |
30292348 |
cgttttaatgcttattatgcttgtatgctctaag---------ctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccac |
30292438 |
T |
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| Q |
211 |
ctttctactatgaataaattaatcaagaacaagttttgtgccacctcctctctgctactatgagtatgaacgaacgatatttttccctacagaatgagta |
310 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30292439 |
tttcctactatgaataaattaatcaagaacaagttttgtgccacctcctctctgctactatgagtatgaacgaaagatatttttccctacagaatgagta |
30292538 |
T |
|
| Q |
311 |
agaataacttaatcaagtataaatggtggatatatgtccttaa |
353 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30292539 |
agaatgacttaatcaagtataaatggtggatatatgtccttaa |
30292581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 30315748 - 30316003
Alignment:
| Q |
11 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
30315748 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggag |
30315847 |
T |
|
| Q |
111 |
ctttttaatg--------cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactag |
202 |
Q |
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|||||||||| | |||||| ||| ||| |||| | |||||||||||||||||||| |||||||||||||||| ||||||| | ||||||| |
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| T |
30315848 |
ctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactag |
30315947 |
T |
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| Q |
203 |
agttccacc-tttctactatgaataaattaatcaagaacaagttttgtgccacctc |
257 |
Q |
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| T |
30315948 |
agttccaccttttgtactatgaataaattaatcaagaataagttttgtgccacctc |
30316003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 30304882 - 30305136
Alignment:
| Q |
11 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
30304882 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggag |
30304981 |
T |
|
| Q |
111 |
ctttttaatg--------cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactag |
202 |
Q |
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|||||||||| |||||||| || | | || | |||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
30304982 |
ctttttaatgagtgatcaaatattatgcaagtatgatatatggagctatagctaataatgagcgatgaataaaacggcattatcttgtaactataactag |
30305081 |
T |
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| Q |
203 |
agttccacctttctactatgaataaattaatcaagaacaagttttgtgccacctc |
257 |
Q |
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||||||||||||||||||||||||| | ||||||||| |||||||| |||||||| |
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| T |
30305082 |
agttccacctttctactatgaataactgaatcaagaataagttttgagccacctc |
30305136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 30287214 - 30287474
Alignment:
| Q |
11 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
30287214 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggag |
30287313 |
T |
|
| Q |
111 |
ctttttaatg--------cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactag |
202 |
Q |
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|||||||||| | |||||| ||| ||| |||| | |||||||||||| |||| || |||||||||||||||| |||| ||||||| |
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| T |
30287314 |
ctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcataatgagaaaagaataaaacggcattatcttg------taactag |
30287407 |
T |
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| Q |
203 |
agttccacctttctactatgaataaattaatcaagaacaagttttgtgccacctcctctctgctact |
269 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
30287408 |
agttcctcctttctactatgaataaattaatcaagaataagttttgtgcctcctcctctctgctact |
30287474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 30300090 - 30300338
Alignment:
| Q |
11 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||| |
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| T |
30300090 |
cagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggag |
30300189 |
T |
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| Q |
111 |
ctttttaatg--------cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactag |
202 |
Q |
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|||||||| |||||||||||| ||| |||| || ||||||||||||||||| ||||||||||||| || |||| || |||| |
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| T |
30300190 |
tattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggcaatatcttg------tatctag |
30300283 |
T |
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| Q |
203 |
agttccacctttctactatgaataaattaatcaagaacaagttttgtgccacctc |
257 |
Q |
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||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
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| T |
30300284 |
agttccacctttccaccatgaataaattaatcaagaataagttttgtgccacctc |
30300338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 30287513 - 30287582
Alignment:
| Q |
282 |
gaacgatatttttccctacagaatgagtaagaataacttaatcaagtataaatggtggatatatgtccttaa |
353 |
Q |
| |
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|||| |||||||||||||| ||| |||| |||||||||||||||| |||||||| |||||||||||||||| |
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| T |
30287513 |
gaacaatatttttccctactgaaagagt--gaataacttaatcaagcataaatggaggatatatgtccttaa |
30287582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 46810542 - 46810582
Alignment:
| Q |
14 |
agacaatcttactttgcaaatgctcagcctcaacaaaggga |
54 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |
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| T |
46810542 |
agacaatcttactttgcaaatgctcaacctcaacaaaggga |
46810582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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