View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_high_7 (Length: 338)
Name: NF12936_high_7
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 4765226 - 4764912
Alignment:
| Q |
16 |
acaaattataaattgtaacgaacgttgactctttcaatgaatttttcctcatgccttgcacgagttcacggtactagtattgtagaatataattattttt |
115 |
Q |
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| T |
4765226 |
acaaattataatttgtaacgaacgttgactctttcaatgaatttttcctcatgccttgcacgagttcacggtactagtattgtagaatataattattttt |
4765127 |
T |
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| Q |
116 |
aaaaaattaccgaaagtaaagaagcaagtgttggaaaactctgagttgatgagtacttttatacaactgattacaaatgcatccttatttattacacata |
215 |
Q |
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| T |
4765126 |
aaaaaattaccgaaagtaaagaagaaagtgttggaaaactctgagttgatgagtacttttatacaactgattacaaatgcatccttatttattacacata |
4765027 |
T |
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| Q |
216 |
ataaataacctgctgtggtatatcagaattggctactgcataacctgcaatatttacaatgggaaaaggtggtaannnnnnnctaaattaagttaaaatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
4765026 |
ataaataacctgctgtggtatatcagaattggctactgcataacctgcaatatttacagtgggaaaaggtggtaatttttttctaaattaagttaaaatg |
4764927 |
T |
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| Q |
316 |
aactatatgatgatg |
330 |
Q |
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||||||||||||||| |
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| T |
4764926 |
aactatatgatgatg |
4764912 |
T |
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