View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_high_9 (Length: 315)
Name: NF12936_high_9
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 47735951 - 47736133
Alignment:
| Q |
21 |
agtagaatgagccgacttaccaagactttgatgctatcagaaacannnnnnncaccacctgaagagatagacctatgtacaaaaagataatatgcaaaat |
120 |
Q |
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| T |
47735951 |
agtagaatgagccgacttaccaagactttgatgctatcagaaacatttttttcaccacctgaagagatagacctatgtacaaaaagataatatgcaaaat |
47736050 |
T |
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| Q |
121 |
tagttgagaattgtggtaagagacactatgctattagctagacggttcacctaataaaaaacttcatccaaattgaataatat |
203 |
Q |
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| T |
47736051 |
tagttgagaattgtggtaagagacactatgctattagctagacggttcacctaataaaaatcttcattcaaattgaataatat |
47736133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 47736170 - 47736220
Alignment:
| Q |
247 |
ttggaatagattatgtaaaaagcaattttgctatgtatccttgttcaagtt |
297 |
Q |
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| T |
47736170 |
ttggaatagataatgtaaaaagcaattttgctaagtatccttgttcaagtt |
47736220 |
T |
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