View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_1 (Length: 969)
Name: NF12936_low_1
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 439 - 953
Target Start/End: Original strand, 36330073 - 36330587
Alignment:
| Q |
439 |
cattttagattcaaatcttcttactaataatacatggtcatcaacttaacaaacaaattaaagtttgacttgtaaaatttaaaagcacccaagtatgtta |
538 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330073 |
cattttagattcaaatcttcttactaataatacatggtcatcaacttaacatacaaattaaagtttgacttgtaaaatttaaaagcacccaagtatgtta |
36330172 |
T |
|
| Q |
539 |
aaccctaatgagttaacttcataaatcaatgttgtcaaactcaattgtaaacaagatcattaccttgttaagtctagaaccatcatttctatgaggttcc |
638 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
36330173 |
aaccctaatgagttaacttcacaaatcaatgttgtcaaactcaattgtaaacaacatcattaccttgttaagtctagaaccatcatctctatgagcttcc |
36330272 |
T |
|
| Q |
639 |
agtactagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaa |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330273 |
agtactagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaa |
36330372 |
T |
|
| Q |
739 |
aggatatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggc |
838 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330373 |
aggatatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatacttttttgatataacatatgctaccttcctttctaccttggc |
36330472 |
T |
|
| Q |
839 |
ttgatcagcctctggaagtggtgtatgcatagttctagcattcttctcaattgattgaaccctaatctttagtttattgtgatcaacaaaatttggatta |
938 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330473 |
ttgatcagcctctggaagtggtgtatgcatagttctaccattcttctcaattgattgaaccctaatctttagtttattgtgatcaacaaaatttggatta |
36330572 |
T |
|
| Q |
939 |
agaagatcctctatg |
953 |
Q |
| |
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||||||||||||||| |
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| T |
36330573 |
agaagatcctctatg |
36330587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 14 - 374
Target Start/End: Original strand, 36329645 - 36330006
Alignment:
| Q |
14 |
cacagacaacatcaatnnnnnnngaatgctttgcaaacagaaatataacaatgtggttagtgcttattttatccttaaactccaaaagacacttgaaatt |
113 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36329645 |
cacagacaacatcaataaaaaaagaatgctttgcaaacagaaatataacaatgtggttagtgcttattttattcttaaactccaaaagacacttgaaatt |
36329744 |
T |
|
| Q |
114 |
tgaatacaggctaaaa-tctcaaaatacatttgaacttaaatttttcatattatgctagtcaagagggttatggcttgtctactacgtcatctcataatg |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36329745 |
tgaatacaggctaaaaatctcaaaatacatttgaacttaaatttttcatattatgctagtcaagagggttatggcttgtctactacgtcatctcataatg |
36329844 |
T |
|
| Q |
213 |
tatcaagaatatatacatcacttttggcagtagtaattgaatgtgtgtgaaattaaagtccatattttattcatccatgctgctaaaattttgaacataa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
36329845 |
tatcaagaatatatacatcacttttggcagtagtaattgaatgtgtgtgaaattaaagtccacattttattcatccatgctgctaaaattttcaacataa |
36329944 |
T |
|
| Q |
313 |
tttgataaaagggtaaaagagttaagaacgctgagaaatagagggagaagcaaacgaaatat |
374 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36329945 |
tttgataaaagggtaaaagacttaagaacgctgagaaatagagggagaagcaaacgaaatat |
36330006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 642 - 876
Target Start/End: Original strand, 44369379 - 44369613
Alignment:
| Q |
642 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaagg |
741 |
Q |
| |
|
||||||||||| | || |||||||||| || ||| ||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||| |
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| T |
44369379 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatctgtcttttcatcaaagt |
44369478 |
T |
|
| Q |
742 |
atatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttg |
841 |
Q |
| |
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| |||| | || || || ||| ||||||||| || || |||||||||| || | || ||||| ||| || ||||||||||| ||||| ||||| |
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| T |
44369479 |
acttagtaggagcctccctatttttctgaataaggggttgccactttgtgacttgttccttagatatttgatacgccaccttcctttccaccttcgcttg |
44369578 |
T |
|
| Q |
842 |
atcagcctctggaagtggtgtatgcatagttctag |
876 |
Q |
| |
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||| |||| ||||||||||| ||| | |||||||| |
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| T |
44369579 |
atctgcctttggaagtggtgcatgaacagttctag |
44369613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 682 - 890
Target Start/End: Original strand, 52929484 - 52929692
Alignment:
| Q |
682 |
taaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgcatctctgtttgtctgaataaaaggctg |
781 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| | | ||| || || || ||| ||||||||| | || |
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| T |
52929484 |
taaattcagaagctatagctcctatagttgaaaaccctagatctatcttttcatcaaagtacacagtaagagcctccctatttctctgaataatggattg |
52929583 |
T |
|
| Q |
782 |
atactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattc |
881 |
Q |
| |
|
|| ||||||| || || |||||||| |||| || ||||||||||||||||| |||||||| |||| ||||||||||| ||| | |||||||| | | |
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|
| T |
52929584 |
ccaccttgtgacttgtttctttgatatttcatacgccaccttcctttctacctttgcttgatctgcctttggaagtggtgcatgaacagttctagaacta |
52929683 |
T |
|
| Q |
882 |
ttctcaatt |
890 |
Q |
| |
|
||||||||| |
|
|
| T |
52929684 |
ttctcaatt |
52929692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 642 - 876
Target Start/End: Complemental strand, 20238098 - 20237864
Alignment:
| Q |
642 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaagg |
741 |
Q |
| |
|
||||||||||| | || |||||||||| || ||| ||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||| |
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|
| T |
20238098 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatctgtcttttcatcaaagt |
20237999 |
T |
|
| Q |
742 |
atatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttg |
841 |
Q |
| |
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| |||| | || || || ||| ||||||||| || || |||||||||| || | || ||||| ||| || ||||||||||| ||||| ||||| |
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| T |
20237998 |
acttagtaggagcctccctatttttctgaataaggggttgccactttgtgacttgttccttagatatttgatacgccaccttcctttccaccttcgcttg |
20237899 |
T |
|
| Q |
842 |
atcagcctctggaagtggtgtatgcatagttctag |
876 |
Q |
| |
|
||| |||| ||||||||||| ||| | |||||||| |
|
|
| T |
20237898 |
atctgcctttggaagtggtgcatgaacagttctag |
20237864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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