View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12936_low_15 (Length: 296)

Name: NF12936_low_15
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12936_low_15
NF12936_low_15
[»] chr1 (7 HSPs)
chr1 (3-257)||(47636446-47636700)
chr1 (66-204)||(47287585-47287723)
chr1 (66-172)||(47574592-47574698)
chr1 (94-172)||(47607328-47607406)
chr1 (31-96)||(47568239-47568304)
chr1 (12-169)||(47711620-47711777)
chr1 (48-196)||(6497761-6497909)
[»] chr4 (4 HSPs)
chr4 (99-175)||(36290572-36290648)
chr4 (36-122)||(36376261-36376347)
chr4 (36-122)||(36429306-36429392)
chr4 (45-101)||(36389512-36389568)
[»] chr2 (4 HSPs)
chr2 (126-172)||(2712576-2712622)
chr2 (126-172)||(2717100-2717146)
chr2 (126-172)||(2723722-2723768)
chr2 (96-172)||(2698501-2698577)
[»] chr5 (3 HSPs)
chr5 (99-176)||(454539-454616)
chr5 (48-85)||(28419879-28419916)
chr5 (48-85)||(28433112-28433149)
[»] chr3 (1 HSPs)
chr3 (30-135)||(36067108-36067213)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 47636446 - 47636700
Alignment:
Q  3 caaaggctgttggattggacaaggcgttacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636446 caaaggctgttggattggacaaggcgttacaagattattggagggattgcgcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatc 47636545  T
Q  103 gtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaaattattcggagtggatcaaactcaagg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636546 gtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaaattattcggagtggatcaaactcaagg 47636645  T
Q  203 aaataccagtagaatcgtaggcacatagtaagtacatgtttatatatgcgacata 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636646 aaataccagtagaatcgtaggcacatagtaagtacatgtttatatatgcgacata 47636700  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 47287585 - 47287723
Alignment:
Q  66 tatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttg 165  Q
    |||||||| ||||||||| | |||| ||| || ||||| |||||||||||||| || ||||| || ||||   || | ||||| ||||| || || ||||    
T  47287585 tatcttcacgaagattctcgacttagaatcatacatcgcgatcttaaagctagtaatatattattagatgagaatttaaatcccaaaatttcagattttg 47287684  T
Q  166 gcatggcaaaattattcggagtggatcaaactcaaggaa 204  Q
    | ||||||| | |||| || || |||||||||| |||||    
T  47287685 ggatggcaagaatatttggtgttgatcaaactcgaggaa 47287723  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 47574592 - 47574698
Alignment:
Q  66 tatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttg 165  Q
    ||||| |||||||||||| | || ||||| || ||||||||||| ||| ||||| |  |  |||| |||||  |||||||||||||||| || || ||||    
T  47574592 tatctccatgaagattctcgcctcaaaatcatacatcgtgatctgaaacctagcgatgtcctgttagatggtaatatgaatccaaaaatatcagattttg 47574691  T
Q  166 gcatggc 172  Q
    |||||||    
T  47574692 gcatggc 47574698  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 47607328 - 47607406
Alignment:
Q  94 ttattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggc 172  Q
    |||| ||||||||||||||| |||| || || || || |||| | |||||||||| |||||||| || |||||||||||    
T  47607328 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 47607406  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 47568239 - 47568304
Alignment:
Q  31 acaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaatta 96  Q
    |||||||||||||||| ||||||||||| ||||  ||||| ||||| |||||  | ||||||||||    
T  47568239 acaagattattggaggaattgctcgaggaattctttatctccatgaggattcacgccttaaaatta 47568304  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 47711777 - 47711620
Alignment:
Q  12 ttggattggacaaggcgttacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatctta 111  Q
    |||||||||  |||||| ||||| || |||||||| || ||| ||||| |||  || |||||||| ||||||   |||   ||||| |||||||||||||    
T  47711777 ttggattgggaaaggcgctacaaaatcattggaggtatagctagaggccttctttaccttcatgaggattctcaacttcgtattatacatcgtgatctta 47711678  T
Q  112 aagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcat 169  Q
    |||| || |||||  | ||||||| | |  ||||||| ||||| || |||||||||||    
T  47711677 aagcaagtaacattctcttggatgaaaagttgaatcctaaaatatcagactttggcat 47711620  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 6497909 - 6497761
Alignment:
Q  48 attgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatc 147  Q
    ||||||||||||||||  || ||||| || |||||| | ||    ||||||||||||||||| ||||| || |||||  | || |||| ||| |||||||    
T  6497909 attgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatc 6497810  T
Q  148 caaaaatctcggactttggcatggcaaaattattcggagtggatcaaac 196  Q
    | || || || || ||||||||||||| | |||| || ||||| |||||    
T  6497809 ctaagatatctgattttggcatggcaagactatttggtgtggaccaaac 6497761  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 36290572 - 36290648
Alignment:
Q  99 catcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaa 175  Q
    ||||| ||||| ||||| |||||||| |||||||||| | |||||||||||||||| || ||||||||| |||||||    
T  36290572 catcgagatctaaaagcaagcaacattttgttggatgaaaatatgaatccaaaaatttcagactttggcttggcaaa 36290648  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 36376261 - 36376347
Alignment:
Q  36 attattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaac 122  Q
    |||||| | ||||||||||||||  ||  |||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||    
T  36376261 attatttgtgggattgctcgaggtgttttatatcttcatcaagattcaaggctgaaaataattcatagagatctaaaagccagcaac 36376347  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 36429306 - 36429392
Alignment:
Q  36 attattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaac 122  Q
    |||||| | ||||||||||||||  ||  |||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||    
T  36429306 attatttgtgggattgctcgaggtgttttatatcttcatcaagattcaaggctgaaaataattcatagagatctaaaagccagcaac 36429392  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 36389512 - 36389568
Alignment:
Q  45 gggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcat 101  Q
    ||||||||||||||| ||  |||||||||| ||||||| ||||| ||||| ||||||    
T  36389512 gggattgctcgaggcgttttatatcttcatcaagattcaaggctgaaaatcattcat 36389568  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 2712622 - 2712576
Alignment:
Q  126 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 172  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||    
T  2712622 ttgttggatggagaaatgaatccaaaaatatctgactttggcatggc 2712576  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 2717146 - 2717100
Alignment:
Q  126 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 172  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||    
T  2717146 ttgttggatggagaactgaatccaaaaatatccgactttggcatggc 2717100  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 2723768 - 2723722
Alignment:
Q  126 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 172  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||    
T  2723768 ttgttggatggagaactgaatccaaaaatatccgactttggcatggc 2723722  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 2698577 - 2698501
Alignment:
Q  96 attcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggc 172  Q
    |||||||| ||||| ||||| || ||||| ||||| |||| | | |||||||||||||| || ||||||||| ||||    
T  2698577 attcatcgagatctaaaagcaagtaacattttgttagatgaaaacatgaatccaaaaatatctgactttggcttggc 2698501  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 454616 - 454539
Alignment:
Q  99 catcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaaa 176  Q
    ||||||||||| ||| ||||||| |||||||| |||    |||||||||||||||| || |||||||| |||||||||    
T  454616 catcgtgatctcaaacctagcaatatattgttagataagaatatgaatccaaaaatatcagactttggtatggcaaaa 454539  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 28419879 - 28419916
Alignment:
Q  48 attgctcgaggcattcaatatcttcatgaagattctag 85  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28419879 attgctcgaggaattcaatatcttcatcaagattctag 28419916  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 28433112 - 28433149
Alignment:
Q  48 attgctcgaggcattcaatatcttcatgaagattctag 85  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28433112 attgctcgaggaattcaatatcttcatcaagattctag 28433149  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 36067213 - 36067108
Alignment:
Q  30 tacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgt 129  Q
    |||||||||||  |||||||||| ||||| ||||  ||||| ||||| ||||||   || ||||| || ||  ||||||||||| | |||||||| ||||    
T  36067213 tacaagattataagagggattgcacgaggtattctttatctacatgaggattctcatctaaaaatcatacactgtgatcttaaacccagcaacattttgt 36067114  T
Q  130 tggatg 135  Q
    ||||||    
T  36067113 tggatg 36067108  T

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