View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_16 (Length: 289)
Name: NF12936_low_16
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 1164454 - 1164729
Alignment:
| Q |
1 |
atagaagcaactagaa-tgaaactaaactagtcataacatcctacatttccaaatgatataaactaatcaacaagaaaacatgatattaataaagattaa |
99 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
1164454 |
atagaagcaactagaaatgaaactaaactagtcataacatactacatttccaaatgatataaactaatcaataagaaaacatgatattaataaagactaa |
1164553 |
T |
|
| Q |
100 |
gagagattaatgtagacctaaatagaagcaactaaagatgaaatttaacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164554 |
gagagattaatgtagacctaaatagaagcaactaaagatgaaatttaacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatca |
1164653 |
T |
|
| Q |
200 |
atgttgagacacaaatatgaggccctccagataatgttgttgcagaattatgagtaccattgtgcccaccattgtg |
275 |
Q |
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||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1164654 |
atgttgatacacaaatatgaggccctcccgataatgttgatgcagaattatgagtaccattgtgcccaccattgtg |
1164729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 1148456 - 1148563
Alignment:
| Q |
169 |
gtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaattatgagtaccattgtgcccac |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1148456 |
gtctaaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaattatgagtaccattgtgcccac |
1148555 |
T |
|
| Q |
269 |
cattgtga |
276 |
Q |
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|||||||| |
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| T |
1148556 |
cattgtga |
1148563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 272
Target Start/End: Original strand, 1171928 - 1172114
Alignment:
| Q |
88 |
aataaagattaagagag-attaatgtagacctaaatagaagcaactaaagatgaaatttaacttgtggaagtgaaacca-tgtgtctaaagccaaaagct |
185 |
Q |
| |
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|||||||| |||||| | |||||||||| ||||||| |||||||||| |||||| | |||| | |||||||||| | ||||| ||||||||||| || |
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| T |
1171928 |
aataaagactaagagtggattaatgtaggtctaaataatagcaactaaaaatgaaactaaactactagaagtgaaacaaatgtgtttaaagccaaaaact |
1172027 |
T |
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| Q |
186 |
catacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaattatgagtaccattgtgcccaccatt |
272 |
Q |
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| T |
1172028 |
caaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccatt |
1172114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 1181255 - 1181362
Alignment:
| Q |
165 |
atgtgtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaattatgagtaccattgtgc |
264 |
Q |
| |
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|||||| |||||||||||||||| ||| |||||||| ||||||||||||| |||||||| | |||||||||||||||||||||| ||||| ||||||| | |
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| T |
1181255 |
atgtgtttaaagccaaaagctcaaacacaaaatcaaagttgagacacaaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtac |
1181354 |
T |
|
| Q |
265 |
ccaccatt |
272 |
Q |
| |
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|||||||| |
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| T |
1181355 |
ccaccatt |
1181362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 1137012 - 1137112
Alignment:
| Q |
146 |
aacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcaga |
245 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||||||||| |||||||| |||||||||||||||| || ||||||| ||||||||| || |||||| |
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| T |
1137012 |
aactagtggaagtgaaacaatgtaattaaagccaaaagctcaaacataaaagaaatgttgagacacaaacataaggccctgcagataatgatggtgcaga |
1137111 |
T |
|
| Q |
246 |
a |
246 |
Q |
| |
|
| |
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|
| T |
1137112 |
a |
1137112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 1141666 - 1141766
Alignment:
| Q |
146 |
aacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcaga |
245 |
Q |
| |
|
|||| ||||||||||||| || || || | ||||||||||| ||||||||| |||||||||||||||| || ||||||| ||||||||| || |||||| |
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| T |
1141666 |
aactagtggaagtgaaacaatatgattataaccaaaagctcaaacataaaataaatgttgagacacaaacataaggccctgcagataatgatgatgcaga |
1141765 |
T |
|
| Q |
246 |
a |
246 |
Q |
| |
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| |
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|
| T |
1141766 |
a |
1141766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 1160009 - 1160124
Alignment:
| Q |
104 |
gattaatgtagacctaaatagaagcaactaaagatgaaatttaacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgt |
203 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||| |||| | |||| | |||||||| |||| | || |||||| |||| |||| ||||||||| ||||| |
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| T |
1160009 |
gattaatataggcctaaacagaagcaactaaacatgatacttaattagtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgt |
1160108 |
T |
|
| Q |
204 |
tgagacacaaatatga |
219 |
Q |
| |
|
|| |||||||| |||| |
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| T |
1160109 |
tgggacacaaacatga |
1160124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 246
Target Start/End: Original strand, 1145198 - 1145292
Alignment:
| Q |
152 |
tggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaa |
246 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||| | ||||||||||||| || ||||| || | |||| | ||||||||||||| |
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|
| T |
1145198 |
tggaagtgaaataatgtgattaaagccaaaagctcatgcataagaaaaatgttgagacaccaaaatgagtccttgcagaaactgttgttgcagaa |
1145292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 1133477 - 1133558
Alignment:
| Q |
172 |
taaagccaaaagctcatacataaaatcaatgttgagacacaaatatgaggccctccagataatgttgttgcagaattatgag |
253 |
Q |
| |
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|||||||||||| | | ||||||||| |||||||||| ||||| || || |||| || | |||| || |||||||||||||| |
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| T |
1133477 |
taaagccaaaagattacacataaaataaatgttgagaaacaaaaataagtccctgcataaaatgatgctgcagaattatgag |
1133558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 1171852 - 1171901
Alignment:
| Q |
41 |
ctacatttccaaatgatataaactaatcaacaagaaaacatgatattaat |
90 |
Q |
| |
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|||||||| ||||||| | |||| ||||||||||| |||||||||||||| |
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|
| T |
1171852 |
ctacatttacaaatgacacaaacaaatcaacaagagaacatgatattaat |
1171901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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