View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12936_low_17 (Length: 288)
Name: NF12936_low_17
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 3296270 - 3296539
Alignment:
| Q |
2 |
aaaaaagattggataatccagaaatatttaaaattccttttgaagtcagcaattcaaatttctattatttgttttttcttaaagattcttaatgagtgta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
3296270 |
aaaaaagattggataatccagaaatatttaaaactccttttgaagtcagcaattcaaatttctattatatgttttttcttaaagattcttaatgactgta |
3296369 |
T |
|
| Q |
102 |
ataccacttagtcatgggtcatggcttagttgtcaagttactttggagaaacacacaccgtgtctaaacagtggccatactactatcataaattttttga |
201 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3296370 |
atacaacttagtcatgggtcatggcttagttgtcaagttactttggagaaacacacaccgtgtctaaacagtggccatactactagcataaattttttga |
3296469 |
T |
|
| Q |
202 |
gacggccaaatataaaagnnnnnnntacgttaataaatttcttagaataatttgtatttatgtaaaatat |
271 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3296470 |
gacggccaaatataaaagaaaaaaatacgttaataaatttcttagaataatttgtatttacgtaaaatat |
3296539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 3288261 - 3288402
Alignment:
| Q |
6 |
aagattggataatccagaaatatttaaaattccttttgaagtcagcaattcaaatttctattatttgtttt--ttcttaaagattcttaatgagtgtaat |
103 |
Q |
| |
|
||||||| |||||||| || ||| |||||||||||||| ||||||| |||||||| ||| || |||||| || | |||||||| || ||| |||||| |
|
|
| T |
3288261 |
aagattgaataatccaacaacattaaaaattccttttgatgtcagcagttcaaattggtatgatatgtttttcttttaaaagattcctagtgactgtaat |
3288360 |
T |
|
| Q |
104 |
accacttagt--catgggtcatggcttagttgtcaagttact |
143 |
Q |
| |
|
||||| | || ||||||||||||||| |||||||||||||| |
|
|
| T |
3288361 |
accacgttgtcacatgggtcatggcttggttgtcaagttact |
3288402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University