View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12936_low_18 (Length: 287)

Name: NF12936_low_18
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12936_low_18
NF12936_low_18
[»] chr1 (1 HSPs)
chr1 (1-287)||(51367453-51367739)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 51367453 - 51367739
Alignment:
Q  1 attattctggacttagttttagttttcattaacgttgattttctctgcatggagaggtttctctcaaacgaagcattcgaggaacacctcaaaacctcac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51367453 attaatctggacttagttttagttttcattaacgttgattttctctgcatggagaggtttctctcaaacgaagcattcgaggaacacctcaaaacctcac 51367552  T
Q  101 aatcaccaccaccatgacccgccggtgatggagaacgacgacggtcgtgattagggggttgtggaggccgggcatactcacccattgacggcgagtcttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51367553 aatcaccaccaccatgacccgccggtgatggagaacgacgacggtcgtgattagggggttgtggaggccgggcatactcacccattgaaggcgagtcttt 51367652  T
Q  201 gctgtgtcttctccgaacaggatcgttcaccacggcatcaataccattcgaattagaagctggttcctcgaaacttactttcaactc 287  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51367653 gctgtgtcttctccgaacaggatcgttcaccacggcatcaatcccattcgaattagaagctggttcctcgaaacttactttcaactc 51367739  T

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