View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_19 (Length: 285)
Name: NF12936_low_19
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 32812763 - 32812505
Alignment:
| Q |
11 |
caaaggtcactttaagagatggattgaagatagtaatgacggataaagatggtgacaatataccacgacgatctcaaatgacgtttatcatgaaatattt |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32812763 |
caaaggtcactttaagagttggattgaagatagtaatgactgataaagatggtgacaatataccactacgatctcaaatgacgtttatcatgaaatattt |
32812664 |
T |
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| Q |
111 |
tgtaatgtataatgatgaacataaaactttaacaataattagactacgatatattataaatatgttatcattactatataatatccatgtttaatattta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32812663 |
tgtaatgtataatgatgaacataaaactttaacaataattagactacgatatattataaatatgttatcattactatataatatccatgtttaatattta |
32812564 |
T |
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| Q |
211 |
tctgactacttctatcagatactatatatttattttgttataacttattcgtttttgct |
269 |
Q |
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| T |
32812563 |
tcagactacttctatcatatactatatatttattttgttataacttattcgtttttgct |
32812505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 776322 - 776600
Alignment:
| Q |
11 |
caaaggtcactttaagagatggattgaagatagtaatgacggataaagatggtgacaatataccacgacgatctcaaatgacgtttatcatgaaatattt |
110 |
Q |
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| T |
776322 |
caaaggtcactttaagagatggattgaagatagtaatgactgataaagatggtgacaatataccactacgatctcaaatgacgtttatcatgaaatattt |
776421 |
T |
|
| Q |
111 |
tgtaatgtataatgatgaacataaaactttaacaataattagactacgatatattataaatatgttatcattactatataatatccatgtttaatattta |
210 |
Q |
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| T |
776422 |
tgtaatgtataatgatga-cataaaactttaacaataattagactacgatatattataaatatgttatcattactatataatatccatgtttaatactta |
776520 |
T |
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| Q |
211 |
tctgactacttctatcagatactatatatttattttgttataacttattcgtttttgc-----tgcacgggtcaaaagac |
285 |
Q |
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| T |
776521 |
tcaaactatttctatcagatactatatatttattttgttataacatattcgtttttgctctattgcacgggtcaaaagac |
776600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 5739684 - 5739612
Alignment:
| Q |
84 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
156 |
Q |
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| T |
5739684 |
tcaaatgtcgtttaccatgaaatattttgtaatgtatgatgatgaatgtaaaacgttaataataactagacta |
5739612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 5776796 - 5776724
Alignment:
| Q |
84 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
156 |
Q |
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| T |
5776796 |
tcaaatgtcgtttaccatgaaatattttgtaatgtatgatgatgaatgtaaaacgttaataataactagacta |
5776724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 47309343 - 47309410
Alignment:
| Q |
83 |
ctcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataatt |
150 |
Q |
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| T |
47309343 |
ctcaaatgttgtttatcacgaagcattttgtaatgtatgatgatgaacgtaaaaatttaacaataatt |
47309410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 29692772 - 29692702
Alignment:
| Q |
169 |
aatatgttatcattactatataatatccatgtttaatatttatctgactacttctatcagatactatatat |
239 |
Q |
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| T |
29692772 |
aatatgtgatcattgctgtataatatccatgtttaaattttatcatacaacttctattggatactatatat |
29692702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 43784785 - 43784857
Alignment:
| Q |
84 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
156 |
Q |
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||||||| |||||| |||||||||||| |||| |||| |||||||| |||||| |||||||||| ||||||| |
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| T |
43784785 |
tcaaatgtcgtttaccatgaaatatttcgtaacgtatgatgatgaatgtaaaacattaacaataactagacta |
43784857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 9794998 - 9795070
Alignment:
| Q |
84 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
156 |
Q |
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||||||| |||||| |||||||||||| |||| ||| ||||| || |||||| |||||||||| ||||||| |
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| T |
9794998 |
tcaaatgtcgtttaccatgaaatatttcgtaacatatgatgataaatgtaaaacgttaacaataactagacta |
9795070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 23761145 - 23761217
Alignment:
| Q |
84 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta |
156 |
Q |
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||||||| |||||| |||||||||||| |||| |||| |||||||| |||||| |||||||||| ||||||| |
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| T |
23761145 |
tcaaatgtcgtttaccatgaaatatttcgtaacgtatgatgatgaatgtaaaacgttaacaataactagacta |
23761217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 26665952 - 26666021
Alignment:
| Q |
84 |
tcaaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattaga |
153 |
Q |
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||||||| |||| | |||||||||||| |||| |||| |||||||| |||||| |||||||||| |||| |
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| T |
26665952 |
tcaaatgtcgttaaccatgaaatatttcgtaacgtatgatgatgaatgtaaaacgttaacaataactaga |
26666021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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