View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_2 (Length: 906)
Name: NF12936_low_2
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 827; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 827; E-Value: 0
Query Start/End: Original strand, 12 - 890
Target Start/End: Original strand, 27065778 - 27066656
Alignment:
| Q |
12 |
catcattttgttcatcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacga |
111 |
Q |
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|||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27065778 |
catcatcttattcatcgaagaattctcggacaccttgaaaacttgcttcatctcattcaacttagaagatgcaaatggcaatttggtcaaaatggaacga |
27065877 |
T |
|
| Q |
112 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27065878 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaa |
27065977 |
T |
|
| Q |
212 |
ccatgttttttgccaaactaccactatcactaagagagttagttgaagcagtagttttattataactagcaaaagaaatacctttcttgtcataatcctt |
311 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065978 |
ccatgttttttgccaaactaccactatcactgagagagttagttgaagtagtagttttattataactagcaaaagaaatacctttcttgtcataatcctt |
27066077 |
T |
|
| Q |
312 |
aaatgtattattattcccattgtaaactttaaacgaaaccttatgatctaaatcagcacctttagcatagcctttgaaagtttcacttcctggagatttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066078 |
aaatgtattattattcccattgtaaactttaaacgaaaccttatgatctaaatcagcacctttagcatagcctttgaaagtttcacttcctggagatttt |
27066177 |
T |
|
| Q |
412 |
ggataacctggattaagaccgtagttattgaaatccaccttgaccccgcgctgcgaattctcaccatacgaagtgaaagaatcatcaccagaaccagctc |
511 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27066178 |
ggataatctggattttgaccgtagttattgaaatccaccttgaccccgcgctgcgaattctcaccatacgaagtgaaagaatcatcaccagaaccagctc |
27066277 |
T |
|
| Q |
512 |
catctctgtaattggtgaatttctcttgagcagcaaaacttcctttaccatagttcttgaaagtattctcaggtttgttcaaattcttgctatagcttac |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27066278 |
catctctgtaattggtgaatttctcttgagcagcaaaacttcctttaccatagttcttgaaagtattctcaggtttgttcaaattcttactatagcttac |
27066377 |
T |
|
| Q |
612 |
gaaagcatctacagcgcttgagcctttttctgaatatccagagaaatcagatttgaagacgttagcatttttcgcatactgagtgaaaccgttaactgcg |
711 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066378 |
gaaagcatctacagcgcttgagcctttttctgaatatccagagaaatcagatttgaagacgttagcatttttcgcatactgagtgaaaccgttaactgcg |
27066477 |
T |
|
| Q |
712 |
tgaatagagtctttgccgtaacttgcgaaactttggttaccggagttaccaccatcgctgtagcttacgaatgattgttctcttccggtcacggaggctg |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066478 |
tgaatagagtctttgccgtaacttgcgaaactttggttaccggagttaccaccatcgctgtagcttacgaatgattgttctcttccggtcacggaggctg |
27066577 |
T |
|
| Q |
812 |
tgtaggtggtgaattttacgttaggaatgttgctttcttcagagtaggctttgaattcaccgaatccagccatggattt |
890 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066578 |
tgtaggtggtgaattttaggttaggaatgttgctttcttcagagtaggctttgaattcaccgaatccagccatggattt |
27066656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 24 - 324
Target Start/End: Original strand, 27079507 - 27079810
Alignment:
| Q |
24 |
catcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacgaggcaaaaacgac |
123 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||||| ||| || ||||||||| |
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| T |
27079507 |
catcgaggaattctcagacaccttaaaaacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggtacgtggtaaaaacgac |
27079606 |
T |
|
| Q |
124 |
cttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttg |
223 |
Q |
| |
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|||||||||||||||||| | ||||| |||||||||||||| ||||| |||||||| || || |||||||||||||||||||||||| ||||||| |
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|
| T |
27079607 |
cttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacccatttttttg |
27079706 |
T |
|
| Q |
224 |
ccaaactaccactatcactaagagagttagttgaagcagtag---ttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtatt |
320 |
Q |
| |
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|||||||| |||| ||||||| ||| || ||||||| || || | ||| |||||| |||||||||||||||||| || || ||||||||||| || || |
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| T |
27079707 |
ccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccagcaaaagaaataccttttttatcgtaatccttaaacgtgtt |
27079806 |
T |
|
| Q |
321 |
atta |
324 |
Q |
| |
|
|||| |
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|
| T |
27079807 |
atta |
27079810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 27053355 - 27053538
Alignment:
| Q |
31 |
gaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacgaggcaaaaacgaccttggcg |
130 |
Q |
| |
|
||||| || |||||||| ||||| |||||||| | ||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||| || | |
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| T |
27053355 |
gaattttcagacaccttgaaaacttgcttcatattgttcaacttagaagatgcaaagggcaatttgatcaaaatggaacgtggcaaaaacgacctaggtg |
27053454 |
T |
|
| Q |
131 |
gtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
214 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||| ||||||||||||||||| | || |||||||||||||| |||| ||||| |
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| T |
27053455 |
gtaacttatcccttgtatctggcataggcataacagtcccttccttcaacatcctttcgcggaaaaacttacctggttcaacca |
27053538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 14866157 - 14866036
Alignment:
| Q |
115 |
aaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
214 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| ||||||||||| || || ||||| |||||||||||||| | |||||||||||||| | |||| |
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| T |
14866157 |
aaaaacgaccttttaggtaatttatctctaatatcaggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaaccc |
14866058 |
T |
|
| Q |
215 |
tgttttttgccaaactaccact |
236 |
Q |
| |
|
|||||| ||||||||||||| |
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|
| T |
14866057 |
atttttttaccaaactaccact |
14866036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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