View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_25 (Length: 225)
Name: NF12936_low_25
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 17817392 - 17817201
Alignment:
| Q |
18 |
cactgtttgaccattgccttgtcaatggtttcctt-cttttcgtgattggccaatgcttttgcgtagctccctttctgatggcgcatatcagaagggtca |
116 |
Q |
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| T |
17817392 |
cactgtttgacgattgccttgtcaatgattttttttcttttcatgactggccaatgcttttgcgtagctccctttctgatggcgcacatcagaagggtca |
17817293 |
T |
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| Q |
117 |
acttgatnnnnnnnnctggcaaaaccaacctgcccttgtgttttatgcactccatgatctttgtaagttctttcaaacaaaaagtggatgatg |
209 |
Q |
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| T |
17817292 |
acttgat-aaaaaaactggtaaaaccaaccttcccttgtgttttatgcactccatgatctttctaagtgcttccaaacaaaaagtggatgatg |
17817201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 17801458 - 17801269
Alignment:
| Q |
18 |
cactgtttgaccattgccttgtcaatggtttccttcttttcgtgattggccaatgcttttgcgtagctccctttctgatggcgcatatcagaagggtcaa |
117 |
Q |
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| T |
17801458 |
cactgtttgaccattattttgtcaatggttttttttctttcatgactggccagtgcatttgcgtagctccctttctgatggcgcacatcagccgggtcaa |
17801359 |
T |
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| Q |
118 |
cttgatnnnnnnnnctggcaaaaccaacctgcccttgtgttttatgcactccatgatctttgtaagttctttcaaacaaaaagtggatgatg |
209 |
Q |
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| T |
17801358 |
cttgataaaaaat--tggcaaaaccaacctgcccttgtgttttatgcactccatgatctttgtaagttctttcaaacaaaaagtggatgatg |
17801269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 17790509 - 17790320
Alignment:
| Q |
18 |
cactgtttgaccattgccttgtcaatggtttccttcttttcgtgattggccaatgcttttgcgtagctccctttctgatggcgcatatcagaagggtcaa |
117 |
Q |
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|||||||||||| |||| |||||||| ||| || |||| |||| |||||||||||||||||||||||||||||||||||||| | | ||||||||| |
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| T |
17790509 |
cactgtttgacctttgctttgtcaatttttttattactttcatgatcggccaatgcttttgcgtagctccctttctgatggcgcacaatacaagggtcaa |
17790410 |
T |
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| Q |
118 |
cttgatnnnnnnnnctggcaaaaccaacctgcccttgtgttttatgcactccatgatctttgtaagttctttcaaacaaaaagtggatgatg |
209 |
Q |
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| T |
17790409 |
catgataaaaaa--ctggtaaaaccatccttcccttgtgttttatgcactccatgatctttgtaagttctttcaaacagaaagtggatgatg |
17790320 |
T |
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