View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_27 (Length: 220)
Name: NF12936_low_27
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 25306951 - 25306780
Alignment:
| Q |
16 |
cagaaaagaggttcatgtgttggcctccagataacaagtcattggtttcagaatttctaaatgctaaacagcccaacattcaagtaagttattttatata |
115 |
Q |
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| T |
25306951 |
cagaaaagaggttcatgtgttggcctccatataacaagtcattggtttcagaatttctaaatgctaaacaacccaacattcaagtaagttatgttttatt |
25306852 |
T |
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| Q |
116 |
tattttttcaaggataagtgaaaatctataaacatacttaggctccttgatgaaaatcaatcttaacagtgg |
187 |
Q |
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| T |
25306851 |
ttttttttcaagaataagtgaaaatctataaacatacttaggctccttaatgaaaatcaatcttaacagtgg |
25306780 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 25278841 - 25278746
Alignment:
| Q |
51 |
aagtcattggtttcagaatttctaaatgctaaacagcccaacattcaagtaagttattttatatatattttttcaaggataagtgaaaatctataaaca |
149 |
Q |
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| T |
25278841 |
aagtcattggtttcagaatttcaaaatgctaaaaagcccaacattcaagtaagttatgttttata---tttttcaagaataagtcaaaatctataaaca |
25278746 |
T |
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