View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_28 (Length: 220)
Name: NF12936_low_28
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 4946704 - 4946494
Alignment:
| Q |
1 |
cagtagtatgcttacaagttcaggcacatagataggggacataatttgcatcatcttcagtttctttcctaaaaattcgattcgatttgatgtggtatgc |
100 |
Q |
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| T |
4946704 |
cagtagtatgcttacaagttcaggcacatagataggggacataatttgcatcatcttcagtttctttcctaaaaattcgattcgatttgatgtggtatgc |
4946605 |
T |
|
| Q |
101 |
actgaaaaagtg--------aagagnnnnnnnnttaatcagttgaaatctaacatgttagaagaccaaagaaaaccctaaaagaaaaagcagattaagag |
192 |
Q |
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|||| ||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4946604 |
actggaaaagtgaaaaaaaaaagaaaaacaaaattaaacagttgaaatctaacatgttagaagacgaaagaaaaccctaaaagaaaaagcagattaagag |
4946505 |
T |
|
| Q |
193 |
ttaaataggat |
203 |
Q |
| |
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||||||||||| |
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| T |
4946504 |
ttaaataggat |
4946494 |
T |
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