View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_3 (Length: 615)
Name: NF12936_low_3
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Original strand, 4132708 - 4133308
Alignment:
| Q |
1 |
atgaaaagctagctacttccaattctcacgaatcacattcattgaagtttgagaactattggctcaaagtcacaccctccataaagagaaataatccaat |
100 |
Q |
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| T |
4132708 |
atgaaaagctagctacttccaattctcacgaatcacattcattgaagtttgagaactattggctcaaagtcacaccctccataaagagaaataatccaat |
4132807 |
T |
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| Q |
101 |
agtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacgtgctgcgccagaatacaagaccgcaaaatagcatagttataca |
200 |
Q |
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| T |
4132808 |
agtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacatgctgcgccaaaatacaagaccgcaaaatagcatagttataca |
4132907 |
T |
|
| Q |
201 |
caccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatcccttgttgctaattccacaaat |
300 |
Q |
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| T |
4132908 |
caccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatcccttgttgctaattccacaaat |
4133007 |
T |
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| Q |
301 |
ctggaagcaacatatgttgcaacggtttagatagccacaccatcagacccttccgattcaaattttactgctactaaccaattagttcctcacatcagtc |
400 |
Q |
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| T |
4133008 |
ctggaagcaacatatgttgcaatggtttagatagccacaccatcagacccttccgattcaaattttactgctactaaccaattagttcctcacatcagtc |
4133107 |
T |
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| Q |
401 |
cacttccacaacaccttctagctaataacaacttgacactttgataatattaccacacgcctttcgatagttcataaaccaatac-aattcatggcttat |
499 |
Q |
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| T |
4133108 |
cacttccacaacaccttctagctaataacaacttgacactttgataatattaccacacgcctttcgatagttcataaaccaatacaaattcatggcttat |
4133207 |
T |
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| Q |
500 |
ccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggtcccggtcaaggcattccttttccatctttctaatctctcaaagtta |
599 |
Q |
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| T |
4133208 |
ccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggtcccggtcaaggcattccttttccatctttctaatctctcaaagtta |
4133307 |
T |
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| Q |
600 |
c |
600 |
Q |
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| T |
4133308 |
c |
4133308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 602
Target Start/End: Complemental strand, 41102145 - 41102025
Alignment:
| Q |
485 |
caattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggt---cccggtcaaggcattccttttccatctt |
581 |
Q |
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|||||||||||| |||| |||| |||||||||||| | || ||||| |||| |||||||||||| || || ||||||||||||| ||||||| || |
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| T |
41102145 |
caattcatggctcatcctaggacctctcatttacaagatgtccaccatctgttgcaatacctgaaaagtactccaggtcaaggcattctttttccagcta |
41102046 |
T |
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| Q |
582 |
tctaatctctcaaagttactg |
602 |
Q |
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| T |
41102045 |
cccaatctctcaaagttactg |
41102025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 43142220 - 43142144
Alignment:
| Q |
203 |
ccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatcc |
279 |
Q |
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||||||||||| | ||| |||| | | |||| |||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
43142220 |
ccaaaactttacaccgagctttctaattcactacacacagatagtaccaagatgtaattccaatttcttgtatatcc |
43142144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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