View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12936_low_4 (Length: 550)

Name: NF12936_low_4
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12936_low_4
NF12936_low_4
[»] chr4 (3 HSPs)
chr4 (1-338)||(42265020-42265352)
chr4 (408-533)||(42264825-42264950)
chr4 (408-487)||(12861010-12861089)
[»] chr6 (3 HSPs)
chr6 (53-134)||(20361732-20361813)
chr6 (140-171)||(10740748-10740779)
chr6 (138-170)||(13166603-13166635)
[»] chr7 (3 HSPs)
chr7 (408-487)||(16653697-16653776)
chr7 (408-487)||(17628057-17628136)
chr7 (133-171)||(10414219-10414257)
[»] chr8 (1 HSPs)
chr8 (411-492)||(43695634-43695714)
[»] chr2 (1 HSPs)
chr2 (136-171)||(2483666-2483701)
[»] chr5 (1 HSPs)
chr5 (133-171)||(24135092-24135130)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 42265352 - 42265020
Alignment:
Q  1 aaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaaccagagacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42265352 aaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaatcagagacg 42265253  T
Q  101 aacaaaattaacaagaggcacaagacactcaatcaaagcggatcaaaccatgctcttgataccatgttaaccatctacagtttcaatataataataaagg 200  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||||||||    
T  42265252 aacaaaattaacaagagacacgagacactgaatcaaagcggatcaaaccatgctc--------atgttaaccatctacggtttcaatataataataaagg 42265161  T
Q  201 agctggctagggtttcataagaatgacaatggcattgcataatattga----atacaagcgaatatcataaccgcagtaacctattatctcaaacttccc 296  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  42265160 agccggctagggtttcataagaatgacaatggcattgcataatattgaatatatacaagcaaatatcataaccgcagtaacctattatct-aaacttccc 42265062  T
Q  297 cttaaactcatgatccaataacactaggcatcaagagtttgt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42265061 cttaaactcatgatccaataacactaggcatcaagagtttgt 42265020  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 408 - 533
Target Start/End: Complemental strand, 42264950 - 42264825
Alignment:
Q  408 caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaaatacatttctcatga 507  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42264950 caacttactgtgatgcaaaagacttgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaaatacatttctcatga 42264851  T
Q  508 agttttatgactacctatgtgaaaag 533  Q
    ||||||||||||||||||||||||||    
T  42264850 agttttatgactacctatgtgaaaag 42264825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 408 - 487
Target Start/End: Original strand, 12861010 - 12861089
Alignment:
Q  408 caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagt 487  Q
    ||||||||||| |||||| | |||||||||||||||||||| ||||||||||| || || |||||||| ||||| |||||    
T  12861010 caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgtctgggaacttttagatgaattgagagt 12861089  T

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Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 20361813 - 20361732
Alignment:
Q  53 aaccaaactaatccaagtgaaataggagaaacataacaaccagagacgaacaaaattaacaagaggcacaagacactcaatc 134  Q
    ||||||||||||||||   ||||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  20361813 aaccaaactaatccaacacaaatatgagaaacataacaactagagacaaacaaaattgacaagaggcacaagacactcaatc 20361732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 171
Target Start/End: Complemental strand, 10740779 - 10740748
Alignment:
Q  140 ggatcaaaccatgctcttgataccatgttaac 171  Q
    ||||||||||||||||||||||||||||||||    
T  10740779 ggatcaaaccatgctcttgataccatgttaac 10740748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 13166635 - 13166603
Alignment:
Q  138 gcggatcaaaccatgctcttgataccatgttaa 170  Q
    ||||||||||| |||||||||||||||||||||    
T  13166635 gcggatcaaacgatgctcttgataccatgttaa 13166603  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 408 - 487
Target Start/End: Original strand, 16653697 - 16653776
Alignment:
Q  408 caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagt 487  Q
    ||||||||||| |||||| | |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |||||    
T  16653697 caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgtctgagaacttttagatgaattgagagt 16653776  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 408 - 487
Target Start/End: Original strand, 17628057 - 17628136
Alignment:
Q  408 caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagt 487  Q
    ||||||||||| |||||| | |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |||||    
T  17628057 caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgtctgagaacttttagatgaattgagagt 17628136  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 10414257 - 10414219
Alignment:
Q  133 tcaaagcggatcaaaccatgctcttgataccatgttaac 171  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  10414257 tcaaaacggatcaaaccatgctcttgataccatgttaac 10414219  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 492
Target Start/End: Original strand, 43695634 - 43695714
Alignment:
Q  411 cttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaa 492  Q
    ||||||||||||||| | |||| || ||||||||||||| ||||||||||||  |||||||||||| |||||||||| ||||    
T  43695634 cttactgtgatgcaacaaactctac-tcgtcattattcaaaatctgatgtataggatcttttagagaaattaagagtgacaa 43695714  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 2483701 - 2483666
Alignment:
Q  136 aagcggatcaaaccatgctcttgataccatgttaac 171  Q
    ||||||||| ||||||||||||||||||||||||||    
T  2483701 aagcggatcgaaccatgctcttgataccatgttaac 2483666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 24135130 - 24135092
Alignment:
Q  133 tcaaagcggatcaaaccatgctcttgataccatgttaac 171  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  24135130 tcaaagcggatcaaaccacgctcttgataccatcttaac 24135092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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