View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_5 (Length: 482)
Name: NF12936_low_5
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Complemental strand, 6265511 - 6265060
Alignment:
| Q |
11 |
cataggtcatgggtaagtttttgtttatttgagtgatacatgggatagcttgcgagatcgtgatactttcgcgagattttattcgcggtaagtagcaatt |
110 |
Q |
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| T |
6265511 |
cataggtcatgggtaagtttttgtttatttgagtgatacatggggtagcttacgagatcgtgatactttcgcgagattttattcgcggtaagtagcaatt |
6265412 |
T |
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| Q |
111 |
tcctttgagaaaattaatgagaagannnnnnnnnnatcataacaaaactaaagaatgacatgagggacagagattagccctgccccgttaaaagttatgt |
210 |
Q |
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| T |
6265411 |
tcctttgagaaaattaatgagaagattttttttt-atcataacaaaactaaagaatgacatgagggacagagattagccctgccccgttaaaagttatgt |
6265313 |
T |
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| Q |
211 |
gtctattgttggattttgtttataactccaatatgttaatgtgtaaagattttaaattttaatccgaaactttttcattttaaaaggagaattggtggaa |
310 |
Q |
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| T |
6265312 |
gtctattgttggattttgtttataactcca--atgttaatgtgtaaatattttaaattttaatccgaaactttttcattttaaaaggagaattggtggaa |
6265215 |
T |
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| Q |
311 |
tcgtttaatgtnnnnnnnnnnnnntctttaaaaataaattactatggtgcaacatttctcatgatatatgataccaatttaactctaaatacttgattat |
410 |
Q |
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| T |
6265214 |
tcgtttaatgt-aaaaaaaaaaattctttaaaaaaaaattactatggtgcaacatttctcatgatatatgataccaatttaactctaaatacttgattat |
6265116 |
T |
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| Q |
411 |
gagacacagtactatacccaccggcagaagtgactgaaccatccatacgtatattt |
466 |
Q |
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| T |
6265115 |
gagacacagtactatacccaccggcagaagtgactgaaccatccatacgtatattt |
6265060 |
T |
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