View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_6 (Length: 420)
Name: NF12936_low_6
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 120 - 404
Target Start/End: Complemental strand, 45678650 - 45678363
Alignment:
| Q |
120 |
acgtgtatgttctaatccttggagtatgttgcaattgattgattaagtggtcacagtggctacaaatctaaacgagtaatacttgcttgagcataaca-- |
217 |
Q |
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| T |
45678650 |
acgtgtatgttctgatccttggagtatgttgcaattgattgattaagtggtcacagtggctacaaatctaaacgagtaatacttgcttgagcataacagt |
45678551 |
T |
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| Q |
218 |
-ctaaatcatttgaaacatttacagtatatattgtcaaatgccaaatataattgtgatgatgatatatttcaaaaatacgagtttcactgggaagaggga |
316 |
Q |
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| T |
45678550 |
actaaatcatttgaaacatttacagtatatattgtcaaatgccaaatataatggtgatgatgatatatttcaaaaatacgagtttcactgggaagaggga |
45678451 |
T |
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| Q |
317 |
cagttttgtcaaaatagaaaataaaatgtacagttgtcacgtttgcatggagttttgtttctattattaacgatgatggtatggtttt |
404 |
Q |
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| T |
45678450 |
cagttttgtcaaaatagaaaataaaatgtacagttgtcacgtttgcatggagttttgtttctattattaacgatgatggtatggtttt |
45678363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 45678726 - 45678641
Alignment:
| Q |
14 |
agacagactcgaaagagttatgttcatctgaatgggacaagtacaacaacgtaaataggatatatacgtacatatgacgtggatgt |
99 |
Q |
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| T |
45678726 |
agacagactcgaaagagttatgttcatctgaatgggacaagtacaacaacgtaaataggatatatacgtacatatgacgtgtatgt |
45678641 |
T |
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