View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_7 (Length: 397)
Name: NF12936_low_7
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 390
Target Start/End: Complemental strand, 35430646 - 35430274
Alignment:
| Q |
7 |
attataactgcagagaatatagatatatcatgataaaatttcctgtttcaattcattaaaacaaaactagaaattaaaagcacagagagggaatggatca |
106 |
Q |
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| T |
35430646 |
attataactgcagagaatatagatatatcatgataaaatttcatgtttcaattcattaaaacaaaactagaaattaaaagcacagagagggaatggatca |
35430547 |
T |
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| Q |
107 |
ttagcgaacctgaatgtacatagatataaatgaacataatgatgtaaaacggagtgaacttaggttttgtttaggagtttggaggggagggaaaatatac |
206 |
Q |
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| T |
35430546 |
ttagcgaacctgaatgtacagaaatataaatgaacataa----------cggagtgaacttaggttttgtttaggagtttagaggggagggaaaatatac |
35430457 |
T |
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| Q |
207 |
tctttaaannnnnnngaaagatttctctattttctcttatatttcatcattaggaagattactaatggggaaaccaatgtgactatgttgcctcccttcc |
306 |
Q |
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| T |
35430456 |
tctttaattttttttaaaagatttctcaattttctcttatatttcatcgttaggaagattactaaaggg-aaaccaatgtgactatgttgcctcccttcc |
35430358 |
T |
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| Q |
307 |
cctcccctccaaactaccaaacatcattattaagattactaacaggaaaaactatgtgactactgaagattttctagatgatgt |
390 |
Q |
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| T |
35430357 |
cctcccctccaaactaccaaacatcattattaagattactaatgggaaaaactatgtgactgctgaagattttctagatgatgt |
35430274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 26571391 - 26571357
Alignment:
| Q |
163 |
aacttaggttttgtttaggagtttggaggggaggg |
197 |
Q |
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| T |
26571391 |
aacttaggttttgtttgggagtttggaggggaggg |
26571357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 8828798 - 8828770
Alignment:
| Q |
163 |
aacttaggttttgtttaggagtttggagg |
191 |
Q |
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| T |
8828798 |
aacttaggttttgtttaggagtttggagg |
8828770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 16625670 - 16625638
Alignment:
| Q |
297 |
cctcccttcccctcccctccaaactaccaaaca |
329 |
Q |
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| T |
16625670 |
cctcccttcccctcccctccaaactcccaaaca |
16625638 |
T |
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