View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12936_low_9 (Length: 365)
Name: NF12936_low_9
Description: NF12936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12936_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 39980306 - 39979975
Alignment:
| Q |
13 |
attctaaatgacaatctccatttatttatttttataaatggagaagatcctaactcgtaattttgagttcaacttataacaagaaaaccgtctcaattta |
112 |
Q |
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| T |
39980306 |
attctaattgacaatctccatttatttatttttataaataaagaagatcctaactcgtaattttgagttcaacttataacatgaaaaccgtctcaattta |
39980207 |
T |
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| Q |
113 |
taaagttgtccacagcaaagccaatttattagaagagaattgcattattaagttataaactcatgtttagtttaggtctcatttcatcccatagactctt |
212 |
Q |
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| T |
39980206 |
taaagttgtccacagcaaagccaatttattagaagagaattgcattattaagttataaactcatgtttag-----gtctcatttcatcccatagactctt |
39980112 |
T |
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| Q |
213 |
caattttgtattttactgcttaaacgaaagtcacgtgactatacaaaacttctgttcatatatacggtcccatctttgcaactgtcttaattgtccaaga |
312 |
Q |
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| T |
39980111 |
caattttgtattttactgcttaaacgaaagtcacgtgactatacaaaacttctattcatatatacggtcccatctttgcaactgtcttaattttccaaga |
39980012 |
T |
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| Q |
313 |
tttctactcctctaaatctagccacgtcggttctttg |
349 |
Q |
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| T |
39980011 |
tttctactcctctaaatctagccacgtcggttctttg |
39979975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 45446611 - 45446559
Alignment:
| Q |
14 |
ttctaaatgacaatctccatttatttatttttataaatggagaagatcctaactcgt |
70 |
Q |
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| T |
45446611 |
ttctaaatggcaatctccatttattt----ttataaatggagaggatcctaactcgt |
45446559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 39426062 - 39426095
Alignment:
| Q |
35 |
tatttatttttataaatggagaagatcctaactc |
68 |
Q |
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| T |
39426062 |
tatttatttttataaatggagaagatcttaactc |
39426095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 11452985 - 11452953
Alignment:
| Q |
36 |
atttatttttataaatggagaagatcctaactc |
68 |
Q |
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| T |
11452985 |
atttatttttataaatggagaggatcctaactc |
11452953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 29916466 - 29916494
Alignment:
| Q |
33 |
tttatttatttttataaatggagaagatc |
61 |
Q |
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| T |
29916466 |
tttatttatttttataaatggagaagatc |
29916494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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