View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12937_high_3 (Length: 399)

Name: NF12937_high_3
Description: NF12937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12937_high_3
NF12937_high_3
[»] chr3 (4 HSPs)
chr3 (23-384)||(51199943-51200304)
chr3 (261-311)||(52708625-52708675)
chr3 (263-311)||(22508738-22508786)
chr3 (259-311)||(45267304-45267356)
[»] chr4 (1 HSPs)
chr4 (261-311)||(19674415-19674465)
[»] chr6 (1 HSPs)
chr6 (250-311)||(21165236-21165297)
[»] chr1 (6 HSPs)
chr1 (261-310)||(48334141-48334190)
chr1 (261-311)||(9774896-9774946)
chr1 (261-307)||(24427381-24427427)
chr1 (261-311)||(37396848-37396898)
chr1 (261-311)||(50164404-50164454)
chr1 (251-311)||(27264224-27264284)
[»] chr8 (5 HSPs)
chr8 (255-311)||(10718456-10718512)
chr8 (261-311)||(10717122-10717172)
chr8 (261-311)||(36588223-36588273)
chr8 (261-311)||(39440430-39440480)
chr8 (262-311)||(3483635-3483684)
[»] chr7 (3 HSPs)
chr7 (251-310)||(39619800-39619859)
chr7 (261-310)||(24197112-24197161)
chr7 (263-311)||(11217079-11217127)
[»] scaffold0517 (1 HSPs)
scaffold0517 (261-311)||(10316-10366)
[»] scaffold0095 (1 HSPs)
scaffold0095 (261-311)||(42763-42813)
[»] scaffold0001 (1 HSPs)
scaffold0001 (261-311)||(119594-119644)
[»] chr2 (1 HSPs)
chr2 (261-311)||(1777470-1777520)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 23 - 384
Target Start/End: Complemental strand, 51200304 - 51199943
Alignment:
Q  23 cacagacgaataatacatggatttttagcaggtcaacttagatggacctgtattcattgttatagtgttttcaggtggttctcaatcattgatttgagat 122  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51200304 cacaaacgaataatacatggatttttaacaggtcaacttagatggacctgtattcattgttatagtgttttcaggtggttctcaatcattgatttgagat 51200205  T
Q  123 cggaaagtttatattttaaactctatttctcacaataaaacgacctccatcgtttatttcaattggacaataattgcgttacacaattacaacaagaaat 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51200204 cggacagtttatattttaaactctatttctcacaataaaacgacctcgatcgtttatttcgattggacaataattgcgttacacaattacaacaagaaat 51200105  T
Q  223 ccaaatcaaaatcatataaactatctttttatatataagctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtcgttgtaatgtc 322  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51200104 ccaaatcaaaattatataaactatctttttatatataagcttaaatatgcatttggtccatacaaatatagcgagttcgagttttggtcgctgtaatgtc 51200005  T
Q  323 tannnnnnnaagccctctagcattttcctccaatgcatatttttgagtcctccagttcagat 384  Q
    ||       |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51200004 tatttttttaagccctctagcattttcttccaatgcatatttttgagtcctccagttcagat 51199943  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 52708675 - 52708625
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | ||||||||||||||| | |||||||||    
T  52708675 gctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtc 52708625  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 22508738 - 22508786
Alignment:
Q  263 taaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||  |||||||| | ||||||||||||||| |||||||||||    
T  22508738 taaaatatgattttggtccctgcaaatatagcgagtttgagttttggtc 22508786  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 45267304 - 45267356
Alignment:
Q  259 aagctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||||  |||| ||| | ||||||||||||||| |||||||||||    
T  45267304 aagctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtc 45267356  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 19674415 - 19674465
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | ||||||||||||||| |||||||||||    
T  19674415 gctaaaatatgcttttggtccttgcaaatatagcgagtttgagttttggtc 19674465  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 21165236 - 21165297
Alignment:
Q  250 tttatatataagctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||  |||||||||||| |||||||| | ||||||||||||||| | |||||||||    
T  21165236 tttatatattggctaaaatatgcttttggtccctgcaaatatagcgagtttgtgttttggtc 21165297  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 48334190 - 48334141
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggt 310  Q
    |||||||||||| |||||||| |||||||||||||| || ||||||||||    
T  48334190 gctaaaatatgcttttggtccctacaaatatagcgaatttgagttttggt 48334141  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 9774946 - 9774896
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | ||||||||||||||| | |||||||||    
T  9774946 gctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtc 9774896  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 24427427 - 24427381
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagtttt 307  Q
    |||||||||||  |||||||| ||||||||||||||||| |||||||    
T  24427427 gctaaaatatgtttttggtccctacaaatatagcgagtttgagtttt 24427381  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 37396898 - 37396848
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | |||||||||||| || |||||||||||    
T  37396898 gctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtc 37396848  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 50164404 - 50164454
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | ||||||| ||||||| |||||||||||    
T  50164404 gctaaaatatgcttttggtccctgcaaatatggcgagtttgagttttggtc 50164454  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 27264284 - 27264224
Alignment:
Q  251 ttatatataagctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||| |||| |||||||||||  |||||||| | ||||||||||||||| | |||||||||    
T  27264284 ttatttataggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtc 27264224  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 10718512 - 10718456
Alignment:
Q  255 atataagctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    ||||| |||||||||||| |||||||| | ||||||||||||||| | |||||||||    
T  10718512 atataggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtc 10718456  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 10717122 - 10717172
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | ||||||||||||||| | |||||||||    
T  10717122 gctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtc 10717172  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 36588223 - 36588273
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | ||||||||||||||| | |||||||||    
T  36588223 gctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtc 36588273  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 39440480 - 39440430
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | ||||||| ||||||| |||||||||||    
T  39440480 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtc 39440430  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 3483635 - 3483684
Alignment:
Q  262 ctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    ||||||||||  |||||||| | ||||||||||||||| |||||||||||    
T  3483635 ctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtc 3483684  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 39619859 - 39619800
Alignment:
Q  251 ttatatataagctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggt 310  Q
    ||||| ||| |||||||||||| |||||||||| ||||||| ||||||| | ||||||||    
T  39619859 ttataaataggctaaaatatgcttttggtccatgcaaatatggcgagtttgggttttggt 39619800  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 24197161 - 24197112
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggt 310  Q
    |||||||||||| |||||||| | |||||||||||| || ||||||||||    
T  24197161 gctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggt 24197112  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 11217127 - 11217079
Alignment:
Q  263 taaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||| |||||||| | ||||||||||||||| || ||||||||    
T  11217127 taaaatatgcttttggtccctgcaaatatagcgagtttgaattttggtc 11217079  T

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Target: scaffold0517 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 10316 - 10366
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | |||||||||||| || |||||||||||    
T  10316 gctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtc 10366  T

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Target: scaffold0095 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 42813 - 42763
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | ||||||| ||||||| |||||||||||    
T  42813 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtc 42763  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 119594 - 119644
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||| |||||||| | |||||||||||| || |||||||||||    
T  119594 gctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtc 119644  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 1777470 - 1777520
Alignment:
Q  261 gctaaaatatgcatttggtccatacaaatatagcgagttcgagttttggtc 311  Q
    |||||||||||  |||||||| | ||||||||||||||| |||||||||||    
T  1777470 gctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtc 1777520  T

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