View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12937_high_4 (Length: 338)
Name: NF12937_high_4
Description: NF12937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12937_high_4 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 31321933 - 31321596
Alignment:
| Q |
1 |
tcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttc |
100 |
Q |
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| T |
31321933 |
tcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttc |
31321834 |
T |
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| Q |
101 |
agcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaagtatacaaattccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |
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| T |
31321833 |
agcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaagtatacaaattccaa |
31321734 |
T |
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| Q |
201 |
ttctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattacacttaattctctgac |
300 |
Q |
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| T |
31321733 |
ttctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattacacttaattctctgac |
31321634 |
T |
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| Q |
301 |
caccacttctgtgtgttcctacttcaactgctcctgct |
338 |
Q |
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| T |
31321633 |
catcacttctgtgtgttcctacttcaactgctcctgct |
31321596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 31334186 - 31333849
Alignment:
| Q |
1 |
tcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31334186 |
tcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttc |
31334087 |
T |
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| Q |
101 |
agcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaagtatacaaattccaa |
200 |
Q |
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| T |
31334086 |
agcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaagtatacaaattccaa |
31333987 |
T |
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| Q |
201 |
ttctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattacacttaattctctgac |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| |
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| T |
31333986 |
ttctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttctcactggtgttctcattacacttaattctctgac |
31333887 |
T |
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| Q |
301 |
caccacttctgtgtgttcctacttcaactgctcctgct |
338 |
Q |
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| T |
31333886 |
caccacttctgtgtgttcctacttcaactgctcctgct |
31333849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 2010 - 2075
Alignment:
| Q |
273 |
gtgttctcattacacttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgct |
338 |
Q |
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| T |
2010 |
gtgttctcattacacttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgct |
2075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 39110562 - 39110404
Alignment:
| Q |
27 |
gattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
126 |
Q |
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|||||||| || | |||||| ||||||||||| ||| | || | |||||| ||||||| ||| ||||||||| ||||||||||| || ||||| |||| |
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| T |
39110562 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
39110463 |
T |
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| Q |
127 |
caacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaa |
185 |
Q |
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|||| ||||| || | ||||||| |||||| | ||||||||||||||||| |||||| |
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| T |
39110462 |
caactgcaccctcttcttcattcttacccattctacaacttcccatttgatgtgcagaa |
39110404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 10926339 - 10926283
Alignment:
| Q |
3 |
ctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaaca |
59 |
Q |
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| T |
10926339 |
ctatttgaaatacaaaatgcagttgattgaatagttattagaggattaacactaaca |
10926283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 33521062 - 33521232
Alignment:
| Q |
30 |
tgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaa |
129 |
Q |
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|||||||| ||||| ||||| | ||| | |||||||||| | ||| |||||||| ||||| | ||||||||||||||| ||| ||||||||||||| |
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| T |
33521062 |
tgaatagttatcatgggattgatacctatggcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaa |
33521161 |
T |
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| Q |
130 |
cagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaagtatacaaattccaa |
200 |
Q |
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| T |
33521162 |
ccgtgccttccttatcagtgattcctatcctacaactccccatctggtgagcagatgcatacatattccaa |
33521232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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