View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12937_low_1 (Length: 643)
Name: NF12937_low_1
Description: NF12937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12937_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 40 - 624
Target Start/End: Complemental strand, 42450838 - 42450258
Alignment:
| Q |
40 |
atataataaagcattatgacaaacatcatttgtgatnnnnnnntattacgacgtaatttaatccaggtaaacaacccaattgaaccggatataatagggt |
139 |
Q |
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| T |
42450838 |
atataataaagcattatgacaaacatcatttgtgataaaaac--attacgacgtaatttaatccagagaaacaacccaatcgaaccggatataatagggt |
42450741 |
T |
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| Q |
140 |
ttacaactttcacacatattgtgcatcaactacttgtgctagtgctagacctagatgtaaactaatatatgaatattttattgctcacaaaagctatgaa |
239 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450740 |
ttacaactttcaca--tattgtgcatcaactacttgtgctagtgctagacctagatgtaaactaatatatgaatattttattgctcacaaaagctatgaa |
42450643 |
T |
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| Q |
240 |
accttcatacaagggtaccatatgccacatctacgaaatactatttttgaagcatccatgcacgcgaacttctttcattctaaacannnnnnnac-aaac |
338 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
42450642 |
accttcatacaagggtaccgtatgccacatctacgaaatactatttttgaagcatccatgcacgcgaacttctttcattctaaacatttttttacaaaac |
42450543 |
T |
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| Q |
339 |
agttcatctaataataatagaaagaaagaaaaa--atatatactagagaacaacagggggtgagaatgaagggacacttacttgcagcctttgtttcaga |
436 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450542 |
agttcatctaataataatagaaagaaaaaaaaaatatatatactagagaacaacagggggtgagaatgaagggacacttacttgcagcctttgtttcaga |
42450443 |
T |
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| Q |
437 |
cttgtgtttaagggagaagttgctaaagctggannnnnnnnnnnnnnnnnnatatatgtttttgcaaacataaaagtatataaaatcattggtgagattc |
536 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450442 |
cttgtgtttaagggagaagttgctaaagctgga---cttttttttttgtttatatatgtttttgcaaacataaaagtatataaaatcattggtgagattc |
42450346 |
T |
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| Q |
537 |
tgtttaaaaataaatgatcaaatatttaagagattcttaattagtatgatttcttactaaaattaggtgactacgttccagagaaaga |
624 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450345 |
tatttaaaaataaatgatcaaatatttaagagattcttaattagtatgatttcttactaaaattaggtgactacgttccagagaaaga |
42450258 |
T |
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